Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.9e-115 418.3 234 100.0
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 2.9e-102 375.6 233 91.4
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 8.4e-78 294.3 237 78.1
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 4.6e-76 288.5 232 77.6
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.0e-75 287.3 236 78.8
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 5.6e-74 281.6 195 83.6
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 3.1e-72 275.8 185 83.2
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 4.0e-72 275.4 234 76.9
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 9.9e-71 270.8 242 71.1
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.8e-70 268.9 234 73.1
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.9e-69 266.5 233 71.2
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.9e-69 266.5 233 71.2
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 4.2e-69 265.4 189 81.5
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 5.5e-69 265.0 181 79.6
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 5.5e-69 265.0 181 79.6
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.8e-67 260.0 238 68.1
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.8e-67 260.0 210 75.7
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 6.7e-67 258.1 238 68.5
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 8.7e-67 257.7 199 77.9
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.3e-66 255.8 234 69.2
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.3e-66 255.8 182 83.0
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.3e-66 255.4 237 64.6
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.3e-65 253.8 199 76.4
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.6e-65 253.4 181 80.7
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.6e-65 253.4 211 74.9
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 3.7e-65 252.3 199 76.4
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 4.8e-65 251.9 181 80.7
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 6.2e-65 251.5 235 68.9
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 6.2e-65 251.5 189 79.4
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 8.1e-65 251.1 237 67.5
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.8e-64 250.0 226 71.2
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.8e-64 250.0 183 78.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.8e-64 250.0 185 79.5
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 4.0e-64 248.8 195 75.9
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 5.3e-64 248.4 232 64.7
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 6.9e-64 248.1 197 75.1
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 9.0e-64 247.7 244 68.9
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.5e-63 246.9 233 69.5
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.5e-63 246.9 224 63.4
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.5e-63 246.9 225 63.1
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 3.4e-63 245.7 189 76.7
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 3.4e-63 245.7 242 65.7
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.0e-62 244.2 248 59.3
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.0e-62 244.2 240 66.2
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.0e-62 244.2 235 66.4
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.3e-62 243.8 237 66.7
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 3.8e-62 242.3 214 66.4
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 8.4e-62 241.1 237 64.1
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 8.4e-62 241.1 240 66.2
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.1e-61 240.7 184 71.7
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.4e-61 240.4 183 78.1
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.4e-61 240.4 183 78.1
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 2.5e-61 239.6 239 66.1
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.2e-61 238.8 237 63.7
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 4.2e-61 238.8 193 67.9
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 5.5e-61 238.4 224 68.8
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 7.1e-61 238.0 216 67.1
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 7.1e-61 238.0 209 73.2
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 9.3e-61 237.7 203 71.9
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.2e-60 237.3 199 72.4
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.2e-60 237.3 212 69.8
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 2.1e-60 236.5 224 68.3
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 3.5e-60 235.7 224 68.3
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 3.5e-60 235.7 208 72.6
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 4.6e-60 235.3 181 73.5
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 6.0e-60 235.0 184 75.0
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 7.9e-60 234.6 222 67.6
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 7.9e-60 234.6 267 59.9
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.0e-59 234.2 232 59.5
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.3e-59 233.8 185 75.7
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.8e-59 233.4 184 70.1
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.3e-59 233.0 208 65.9
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.0e-59 232.6 231 60.2
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 3.0e-59 232.6 181 72.9
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 3.9e-59 232.3 184 71.2
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 3.9e-59 232.3 187 75.4
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 8.7e-59 231.1 219 66.2
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.1e-58 230.7 197 71.1
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.5e-58 230.3 183 69.4
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 3.3e-58 229.2 240 60.8
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 3.3e-58 229.2 276 52.9
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 4.3e-58 228.8 198 71.2
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 5.7e-58 228.4 206 68.0
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 9.6e-58 227.6 182 70.3
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 1.6e-57 226.9 183 74.3
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.1e-57 226.5 183 73.8
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.1e-57 226.5 183 73.8
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 2.8e-57 226.1 203 68.5
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.8e-57 226.1 231 59.3
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 8.2e-57 224.6 231 58.9
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 8.2e-57 224.6 184 67.4
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.4e-56 223.0 196 69.4
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 9.0e-56 221.1 199 68.3
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.2e-55 220.7 182 71.4
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.0e-55 219.9 228 58.8
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 7.6e-55 218.0 237 56.1
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 2.9e-54 216.1 204 62.3
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.1e-53 214.2 241 53.1
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.5e-50 203.8 170 66.5
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 3.7e-49 199.1 255 57.3
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 6.3e-49 198.4 182 63.7
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 3.1e-48 196.1 221 57.0
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.6e-47 193.0 182 62.1
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 4.5e-47 192.2 187 59.4
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 5.9e-47 191.8 181 59.7
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.7e-46 190.3 183 63.9
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.6e-44 183.7 189 56.6
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.4e-42 175.6 130 81.5
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.3e-41 174.1 237 54.4
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 6.3e-41 171.8 329 46.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.3e-38 164.1 141 61.0
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 2.1e-36 156.8 213 51.2
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.1e-34 151.0 184 50.0
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.5e-29 134.0 109 66.1
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 7.2e-29 131.7 135 57.0
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.6e-28 130.6 94 71.3
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.7e-28 129.8 94 70.2
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.3e-25 120.9 233 47.6
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 2.8e-25 119.8 123 52.8
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.7e-25 119.4 131 55.0
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.2e-23 114.4 99 58.6
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.6e-23 114.0 232 38.8
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.3e-22 110.9 241 38.2
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.9e-22 109.8 163 45.4
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 3.8e-22 109.4 79 65.8
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 3.8e-22 109.4 153 47.7
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-21 107.8 74 73.0
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 3.6e-20 102.8 204 39.7
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.7e-20 102.4 164 45.1
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.7e-20 102.4 208 37.5
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 6.1e-20 102.1 204 39.2
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.8e-17 93.2 82 62.2
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 4.1e-16 89.4 183 37.7
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 5.0e-14 82.4 147 38.1
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 1.9e-13 80.5 54 100.0
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.4e-11 74.3 115 43.5
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.1e-08 64.7 51 66.7
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.8e-08 63.9 158 32.9


User provided reference genes

Program Settings