Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 2.1e-220 768.8 413 100.0
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 5.1e-203 711.1 413 90.3
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 8.1e-201 703.7 413 86.7
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 2.6e-199 698.7 413 88.1
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 2.1e-196 689.1 413 82.8
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 5.4e-189 664.5 413 81.1
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 1.6e-188 662.9 414 81.2
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 3.0e-187 658.7 413 80.1
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 1.1e-186 656.8 413 80.4
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 1.1e-184 650.2 400 80.8
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 2.6e-183 645.6 414 80.2
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 9.3e-181 637.1 413 79.9
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 6.3e-169 597.8 413 75.8
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.7e-166 589.7 413 71.4
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 7.9e-164 580.9 416 71.9
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 8.8e-163 577.4 417 70.0
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 8.8e-163 577.4 414 72.0
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.1e-162 577.0 413 72.9
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 2.0e-162 576.2 413 71.9
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 2.2e-161 572.8 403 72.5
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 3.4e-159 565.5 416 70.7
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.3e-158 563.5 413 69.2
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.7e-158 563.1 348 78.4
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 2.2e-158 562.8 378 74.6
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 5.0e-158 561.6 388 72.7
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.5e-157 558.1 414 72.5
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 9.4e-157 557.4 413 70.7
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 9.4e-157 557.4 413 68.5
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 9.4e-157 557.4 398 71.1
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 4.7e-156 555.1 356 77.5
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.8e-155 553.1 413 72.9
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.3e-155 552.7 400 74.0
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.1e-155 551.6 413 69.7
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 4.4e-154 548.5 301 86.7
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 1.3e-153 547.0 423 67.8
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.3e-153 547.0 345 78.0
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.7e-153 546.6 346 78.6
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 4.8e-153 545.0 281 92.2
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.3e-153 544.7 413 71.7
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 8.2e-153 544.3 399 71.9
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 1.4e-152 543.5 342 83.6
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 2.4e-152 542.7 414 73.7
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 5.3e-152 541.6 344 78.5
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 9.1e-152 540.8 414 73.4
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 9.1e-152 540.8 413 70.5
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 1.6e-151 540.0 409 72.4
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.6e-151 540.0 342 78.7
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.5e-151 538.9 413 73.4
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 7.7e-151 537.7 341 78.0
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.7e-151 537.7 414 73.2
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.9e-149 533.1 414 72.9
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 2.5e-149 532.7 304 83.9
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.2e-149 531.9 438 64.2
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 7.2e-149 531.2 340 76.8
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.2e-148 530.4 304 83.9
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 1.2e-148 530.4 344 79.7
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.2e-148 530.4 296 84.5
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 2.7e-148 529.3 301 84.4
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.6e-148 528.9 393 70.0
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 6.1e-148 528.1 391 74.9
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 6.1e-148 528.1 280 88.6
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.0e-147 527.3 301 83.7
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.4e-147 526.9 298 84.6
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 8.8e-147 524.2 342 76.0
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 8.8e-147 524.2 341 75.7
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 8.8e-147 524.2 299 83.6
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 2.6e-146 522.7 342 75.7
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 4.4e-146 521.9 304 79.6
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.3e-145 520.4 342 75.4
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 3.7e-145 518.8 294 84.7
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 3.7e-145 518.8 340 80.0
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 6.3e-145 518.1 288 86.1
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 1.1e-144 517.3 294 83.3
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 1.1e-144 517.3 305 81.6
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 1.4e-144 516.9 304 81.2
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 1.4e-144 516.9 432 64.4
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 1.8e-144 516.5 304 80.9
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.1e-144 515.4 310 81.0
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 5.3e-144 515.0 302 80.8
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 9.1e-144 514.2 294 83.0
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.6e-143 513.5 415 68.0
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.6e-143 513.5 299 81.6
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 4.5e-143 511.9 286 84.6
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.3e-142 510.4 307 79.5
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.3e-142 510.4 288 84.4
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 1.3e-142 510.4 365 70.7
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 2.2e-142 509.6 348 72.4
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 3.8e-142 508.8 286 83.9
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 5.0e-142 508.4 415 64.8
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 1.1e-141 507.3 287 84.3
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 1.1e-141 507.3 287 84.3
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.9e-141 506.5 349 73.1
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 4.2e-141 505.4 286 83.9
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 5.5e-141 505.0 321 76.0
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 7.2e-141 504.6 283 84.5
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.6e-140 503.4 496 60.1
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.3e-139 499.6 302 77.2
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.2e-137 493.0 338 70.7
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 3.7e-137 492.3 402 65.7
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.8e-136 490.0 294 80.3
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 3.8e-134 482.3 294 75.9
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 3.8e-134 482.3 322 72.4
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 8.5e-134 481.1 406 63.1
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.1e-133 480.7 266 83.8
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.1e-133 480.7 279 80.6
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 1.6e-132 476.9 265 84.9
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 8.0e-132 474.6 344 69.2
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.5e-130 470.3 302 73.5
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 3.7e-129 465.7 266 83.1
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 4.5e-127 458.8 272 77.9
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.5e-125 453.8 406 64.5
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 2.6e-122 443.0 268 77.6
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 8.6e-118 427.9 296 67.2
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.5e-114 417.2 296 66.2
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 4.9e-113 412.1 350 70.0
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.4e-112 410.6 219 88.6
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 8.6e-110 401.4 450 51.3
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 8.6e-110 401.4 274 67.2
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 3.3e-109 399.4 295 64.4
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 3.4e-106 389.4 413 54.2
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 5.8e-106 388.7 308 61.4
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 5.2e-99 365.5 183 92.3
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 1.9e-96 357.1 409 51.6
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.1e-87 327.0 399 49.4
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.0e-74 283.9 155 83.2
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 8.4e-73 278.5 147 85.7
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 6.2e-68 262.3 268 62.3
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 7.9e-47 192.2 173 59.5
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.4e-46 191.4 160 75.0
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 8.2e-44 182.2 238 44.1
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 3.4e-42 176.8 120 74.2
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 2.7e-39 167.2 161 57.8
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 5.7e-37 159.5 94 71.3
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.8e-35 154.5 161 52.8
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 6.1e-31 139.4 125 60.0
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 4.4e-29 133.3 66 87.9
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.1e-27 126.7 84 73.8
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 9.1e-27 125.6 66 81.8
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 7.7e-26 122.5 72 84.7
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.4e-22 111.7 71 77.5
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.8e-20 104.0 65 75.4
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 3.2e-16 90.5 66 69.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 4.7e-15 86.7 66 62.1
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 3.6e-07 60.5 45 60.0
Lsat_1_v5_gn_8_121800 Lactuca sativa HOM05D001816 ORTHO05D002001 1.4e-06 58.5 225 28.9


User provided reference genes

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