Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g067280 Pisum sativum HOM05D005897 ORTHO05D007128 8.2e-99 363.6 170 100.0
Medtr4g124850 Medicago truncatula HOM05D005897 ORTHO05D007128 5.0e-48 194.9 180 60.0
TPR.G11456 Trifolium pratense HOM05D005897 ORTHO05D007128 7.0e-42 174.5 169 55.0
Lj4g0017959 Lotus japonicus HOM05D005897 ORTHO05D007128 1.0e-32 144.1 179 49.7
Glyma.17G046700 Glycine max HOM05D005897 ORTHO05D007128 3.6e-30 135.6 162 51.2
Phvul.003G128400 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 4.0e-29 132.1 169 48.5
VMungo1215G2819 Vigna mungo HOM05D005897 ORTHO05D007128 6.8e-29 131.3 165 50.9
Glyma.13G113000 Glycine max HOM05D005897 ORTHO05D007128 2.0e-28 129.8 165 47.9
Ca_05224_v3 Cicer arietinum L. HOM05D005897 ORTHO05D007128 2.4e-26 122.9 188 44.1
Lj6g0011186 Lotus japonicus HOM05D005897 ORTHO05D007128 1.2e-25 120.6 182 44.5
Glyma.15G181800 Glycine max HOM05D005897 ORTHO05D007128 3.9e-24 115.5 191 42.4
TPR.G4016 Trifolium pratense HOM05D005897 ORTHO05D007128 1.9e-23 113.2 182 39.0
arahy.Tifrunner.gnm1.ann1.K6A74J Arachis hypogaea HOM05D005897 ORTHO05D007128 2.5e-23 112.8 171 46.8
Medtr2g043710 Medicago truncatula HOM05D005897 ORTHO05D007128 2.5e-23 112.8 195 40.0
Haze_26054 Corylus avellana HOM05D005897 ORTHO05D007128 4.3e-23 112.1 192 43.8
VMungo1309G2633 Vigna mungo HOM05D005897 ORTHO05D007128 9.6e-23 110.9 181 40.9
RcHm_v2.0_Chr2g0095761 Rosa chinensis HOM05D005897 ORTHO05D007128 1.6e-22 110.2 187 40.1
Cfa002951 Carpinus fangiana HOM05D005897 ORTHO05D007128 3.6e-22 109.0 192 42.7
Gohir.A06G079100 Gossypium hirsutum HOM05D005897 ORTHO05D007128 3.6e-22 109.0 188 42.0
Phvul.009G224300 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 3.6e-22 109.0 184 41.8
Duzib150G1683 Durio zibethinus HOM05D005897 ORTHO05D007128 6.2e-22 108.2 205 39.5
Gohir.D06G078500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 8.1e-22 107.8 187 41.7
Gorai.010G091500 Gossypium raimondii HOM05D005897 ORTHO05D007128 8.1e-22 107.8 187 41.7
CiPaw.03G202200 Carya illinoinensis HOM05D005897 ORTHO05D007128 8.9e-21 104.4 198 41.9
Glyma.09G073050 Glycine max HOM05D005897 ORTHO05D007128 2.0e-20 103.2 192 38.5
Gohir.A05G035400 Gossypium hirsutum HOM05D005897 ORTHO05D007128 4.4e-20 102.1 199 40.2
Psat1g137480 Pisum sativum HOM05D005897 ORTHO05D007128 5.8e-20 101.7 185 39.5
Thecc.09G071600 Theobroma cacao HOM05D005897 ORTHO05D007128 1.3e-19 100.5 203 38.4
Lalb_Chr23g0276271 Lupinus albus HOM05D005897 ORTHO05D007128 3.8e-19 99.0 180 37.2
Lalb_Chr11g0074041 Lupinus albus HOM05D005897 ORTHO05D007128 1.1e-18 97.4 179 43.6
FAN28G0476 Fragaria x ananassa HOM05D005897 ORTHO05D007128 1.4e-18 97.1 203 36.9
CANSAT56G4244 Cannabis sativa HOM05D005897 ORTHO05D007128 2.4e-18 96.3 181 39.2
FAN26G0251 Fragaria x ananassa HOM05D005897 ORTHO05D007128 2.4e-18 96.3 202 35.6
Gohir.D05G036900 Gossypium hirsutum HOM05D005897 ORTHO05D007128 2.4e-18 96.3 194 40.7
Manes.16G091700 Manihot esculenta HOM05D005897 ORTHO05D007128 4.2e-18 95.5 206 37.4
QL11p002200 Quercus lobata HOM05D005897 ORTHO05D007128 4.2e-18 95.5 201 38.3
TWI32G0373 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 4.2e-18 95.5 189 38.6
TWI34G1248 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 5.4e-18 95.1 191 34.0
FAN23G1701 Fragaria x ananassa HOM05D005897 ORTHO05D007128 9.3e-18 94.4 202 37.1
Ciclev10009511m.g Citrus clementina HOM05D005897 ORTHO05D007128 1.2e-17 94.0 185 36.8
Ciclev10024151m.g Citrus clementina HOM05D005897 ORTHO05D007128 1.2e-17 94.0 181 38.1
Gorai.009G037400 Gossypium raimondii HOM05D005897 ORTHO05D007128 1.2e-17 94.0 194 40.2
COL.COLO4_21221 Corchorus olitorius HOM05D005897 ORTHO05D007128 2.1e-17 93.2 203 36.9
Dinv42424 Davidia involucrata HOM05D005897 ORTHO05D007128 2.7e-17 92.8 193 36.3
FvH4_1g09230 Fragaria vesca HOM05D005897 ORTHO05D007128 2.7e-17 92.8 197 38.6
FAN26G0677 Fragaria x ananassa HOM05D005897 ORTHO05D007128 3.5e-17 92.4 203 35.5
Duzib168G1262 Durio zibethinus HOM05D005897 ORTHO05D007128 4.6e-17 92.0 192 37.5
FAN19G1802 Fragaria x ananassa HOM05D005897 ORTHO05D007128 4.6e-17 92.0 197 38.6
MD15G1222300 Malus domestica HOM05D005897 ORTHO05D007128 4.6e-17 92.0 198 36.9
AT3G43110 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 1.0e-16 90.9 174 36.2
Sp5g18750 Schrenkiella parvula HOM05D005897 ORTHO05D007128 1.0e-16 90.9 176 38.1
Carub.0006s1909 Capsella rubella HOM05D005897 ORTHO05D007128 1.7e-16 90.1 201 36.3
Nitab4.5_0008755g0010 Nicotiana tabacum HOM05D005897 ORTHO05D007128 3.0e-16 89.4 175 37.7
AL5G21230 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 8.7e-16 87.8 182 35.2
Sp6g23730 Schrenkiella parvula HOM05D005897 ORTHO05D007128 1.1e-15 87.4 198 35.9
Sopen07g022000 Solanum pennellii HOM05D000392 ORTHO05D002065 1.5e-15 87.0 182 35.2
Manes.03G043500 Manihot esculenta HOM05D005897 ORTHO05D007128 1.9e-15 86.7 195 34.4
Nitab4.5_0001699g0070 Nicotiana tabacum HOM05D005897 ORTHO05D007128 1.9e-15 86.7 188 36.2
AT5G20790 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 2.5e-15 86.3 189 37.0
CARHR152530 Cardamine hirsuta HOM05D005897 ORTHO05D007128 2.5e-15 86.3 183 35.0
Nitab4.5_0000400g0090 Nicotiana tabacum HOM05D005897 ORTHO05D007128 3.3e-15 85.9 221 30.8
CSS0017580 Camellia sinensis var. sinensis HOM05D005897 ORTHO05D007128 4.3e-15 85.5 178 36.5
Gohir.A07G016700 Gossypium hirsutum HOM05D005897 ORTHO05D007128 4.3e-15 85.5 200 36.0
PGR044G2287 Punica granatum HOM05D005897 ORTHO05D007128 4.3e-15 85.5 206 35.0
SalBow6G0024 Salvia bowleyana HOM05D005897 ORTHO05D007128 4.3e-15 85.5 181 35.4
Gorai.001G017300 Gossypium raimondii HOM05D005897 ORTHO05D007128 9.6e-15 84.3 196 34.2
Gohir.D07G016500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.3e-14 84.0 198 34.8
AL6G32310 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 1.6e-14 83.6 216 33.8
Nitab4.5_0001092g0030 Nicotiana tabacum HOM05D005897 ORTHO05D007128 1.6e-14 83.6 208 32.7
TAR383G0419 Trochodendron aralioides HOM05D005897 ORTHO05D007128 1.6e-14 83.6 194 36.1
Thhalv10014753m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 2.1e-14 83.2 191 35.1
Prupe.7G193600 Prunus persica HOM05D005897 ORTHO05D007128 2.1e-14 83.2 221 33.9
BraA10t44004Z Brassica rapa HOM05D005897 ORTHO05D007128 2.8e-14 82.8 187 38.0
Aa31LG4G13050 Aethionema arabicum HOM05D005897 ORTHO05D007128 4.8e-14 82.0 185 34.6
Carub.0005s0898 Capsella rubella HOM05D005897 ORTHO05D007128 4.8e-14 82.0 185 32.4
Atru.chr7.1754 Acer truncatum HOM05D005897 ORTHO05D007128 1.1e-13 80.9 201 33.3
BcaB08g36527 Brassica carinata HOM05D005897 ORTHO05D007128 1.1e-13 80.9 193 34.2
TAR624G1366 Trochodendron aralioides HOM05D005897 ORTHO05D007128 1.1e-13 80.9 186 34.9
BcaB05g22814 Brassica carinata HOM05D005897 ORTHO05D007128 1.8e-13 80.1 189 37.0
CiPaw.04G140700 Carya illinoinensis HOM05D005897 ORTHO05D007128 1.8e-13 80.1 206 35.0
Sabra06G0107900 Salix brachista HOM05D005897 ORTHO05D007128 2.4e-13 79.7 194 34.0
A10p19270 Brassica napus HOM05D005897 ORTHO05D007128 6.9e-13 78.2 185 36.8
CARHR192060 Cardamine hirsuta HOM05D005897 ORTHO05D007128 9.0e-13 77.8 191 35.1
BcaC04g19466 Brassica carinata HOM05D005897 ORTHO05D007128 1.2e-12 77.4 193 34.2
SGA_v2.0_scaffold21G09544 Striga asiatica HOM05D005897 ORTHO05D007128 1.2e-12 77.4 169 36.1
C09p55420 Brassica napus HOM05D005897 ORTHO05D007128 2.0e-12 76.6 185 35.1
BolC9t58404H Brassica oleracea HOM05D005897 ORTHO05D007128 2.0e-12 76.6 185 35.1
Oeu010835.1 Olea europaea HOM05D005897 ORTHO05D007128 2.0e-12 76.6 192 32.8
MD02G1099300 Malus domestica HOM05D005897 ORTHO05D007128 2.6e-12 76.3 204 35.3
Peaxi162Scf00191g00103 Petunia axillaris HOM05D005897 ORTHO05D007128 4.5e-12 75.5 195 31.8
BcaC03g13798 Brassica carinata HOM05D005897 ORTHO05D007128 5.8e-12 75.1 187 34.8
BolC2t07071H Brassica oleracea HOM05D005897 ORTHO05D007128 5.8e-12 75.1 187 34.8
Cpa.g.sc1772.1 Carica papaya HOM05D005897 ORTHO05D007128 5.8e-12 75.1 188 34.0
Thhalv10002680m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 7.6e-12 74.7 176 33.0
Rhsim05G0003600 Rhododendron simsii HOM05D005897 ORTHO05D007128 9.9e-12 74.3 177 32.8
Rhsim03G0226100 Rhododendron simsii HOM05D005897 ORTHO05D007128 2.2e-11 73.2 168 35.1
Oeu055332.1 Olea europaea HOM05D005897 ORTHO05D007128 2.9e-11 72.8 198 33.3
A02p06480 Brassica napus HOM05D005897 ORTHO05D007128 3.8e-11 72.4 187 35.3
BraA02t05593Z Brassica rapa HOM05D005897 ORTHO05D007128 3.8e-11 72.4 187 35.3
BraA03t10334Z Brassica rapa HOM05D005897 ORTHO05D007128 6.4e-11 71.6 187 33.7
Actinidia39626 Actinidia chinensis HOM05D005897 ORTHO05D007128 2.4e-10 69.7 178 33.7
A03p10250 Brassica napus HOM05D005897 ORTHO05D007128 2.4e-10 69.7 187 33.2
PGR142G3671 Punica granatum HOM05D005897 ORTHO05D007128 2.4e-10 69.7 201 30.3
THA.LOC104799609 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 5.4e-10 68.6 209 30.6
THA.LOC104811289 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 7.1e-10 68.2 198 30.3
C03p11770 Brassica napus HOM05D005897 ORTHO05D007128 1.6e-09 67.0 185 33.0
BolC3t13648H Brassica oleracea HOM05D005897 ORTHO05D007128 1.6e-09 67.0 185 33.0
Eucgr.C03289 Eucalyptus grandis HOM05D005897 ORTHO05D007128 2.1e-09 66.6 195 32.3
PGSC0003DMG400013552 Solanum tuberosum HOM05D005897 ORTHO05D007128 2.1e-09 66.6 174 29.3
Nn6g35653 Nelumbo nucifera HOM05D005897 ORTHO05D007128 2.7e-09 66.2 202 27.2
Oeu055333.1 Olea europaea HOM05D005897 ORTHO05D007128 2.7e-09 66.2 187 32.1
MSTRG.19434 Avicennia marina HOM05D005897 ORTHO05D007128 6.0e-09 65.1 187 31.6
BcaB01g04771 Brassica carinata HOM05D005897 ORTHO05D007128 6.0e-09 65.1 186 32.3
Migut.J00894 Erythranthe guttata HOM05D005897 ORTHO05D007128 1.3e-08 63.9 179 31.3
Potri.006G137700 Populus trichocarpa HOM05D005897 ORTHO05D007128 1.3e-08 63.9 197 28.4
Lsat_1_v5_gn_5_139320 Lactuca sativa HOM05D005897 ORTHO05D007128 1.9e-07 60.1 209 28.2
Nn8g38553 Nelumbo nucifera HOM05D005897 ORTHO05D007128 2.8e-06 56.2 208 29.3
unitig_22.g5071 Utricularia gibba HOM05D005897 ORTHO05D007128 2.8e-06 56.2 182 29.7
Migut.L01590 Erythranthe guttata HOM05D005897 ORTHO05D007128 8.1e-06 54.7 176 29.5


User provided reference genes

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