Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 1.2e-39 166.0 84 100.0
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 4.0e-30 134.4 77 89.6
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 2.7e-26 121.7 77 77.9
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.7e-25 119.0 77 76.6
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 3.0e-25 118.2 77 74.0
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 3.9e-25 117.9 74 79.7
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.3e-24 114.8 84 72.6
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 4.3e-24 114.4 79 72.2
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 5.6e-24 114.0 84 72.6
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 1.6e-23 112.5 77 72.7
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 1.6e-23 112.5 77 74.0
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 3.6e-23 111.3 79 70.9
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 3.6e-23 111.3 77 75.3
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 6.2e-23 110.5 77 72.7
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 6.2e-23 110.5 77 70.1
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 6.2e-23 110.5 77 70.1
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 1.1e-22 109.8 77 71.4
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.8e-22 109.0 77 70.1
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 3.1e-22 108.2 79 72.2
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 3.1e-22 108.2 77 68.8
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 4.0e-22 107.8 67 79.1
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.2e-22 107.5 69 76.8
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 5.2e-22 107.5 77 68.8
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 8.9e-22 106.7 86 65.1
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 1.5e-21 105.9 69 73.9
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 2.0e-21 105.5 79 69.6
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 2.6e-21 105.1 84 65.5
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 2.6e-21 105.1 79 70.9
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 2.6e-21 105.1 75 74.7
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 2.6e-21 105.1 80 66.2
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 3.4e-21 104.8 68 75.0
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 3.4e-21 104.8 79 69.6
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 7.5e-21 103.6 79 69.6
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 7.5e-21 103.6 76 64.5
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 7.5e-21 103.6 79 69.6
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 1.3e-20 102.8 68 73.5
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 1.3e-20 102.8 78 62.8
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.7e-20 102.4 79 63.3
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 4.9e-20 100.9 77 67.5
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 4.9e-20 100.9 73 67.1
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 8.3e-20 100.1 67 74.6
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 8.3e-20 100.1 77 64.9
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.1e-19 99.8 69 66.7
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.9e-19 99.0 77 67.5
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 3.2e-19 98.2 67 70.1
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.2e-19 98.2 67 73.1
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 5.4e-19 97.4 72 68.1
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 7.1e-19 97.1 60 76.7
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 1.6e-18 95.9 67 68.7
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 1.6e-18 95.9 77 63.6
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.6e-18 95.9 63 73.0
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 2.1e-18 95.5 69 69.6
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 2.7e-18 95.1 70 65.7
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 2.7e-18 95.1 61 70.5
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 4.6e-18 94.4 77 66.2
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 6.0e-18 94.0 69 66.7
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 6.0e-18 94.0 71 64.8
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 7.8e-18 93.6 63 71.4
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 7.8e-18 93.6 71 62.0
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 1.0e-17 93.2 70 65.7
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 1.3e-17 92.8 66 69.7
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 3.0e-17 91.7 68 66.2
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 3.9e-17 91.3 80 60.0
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 3.9e-17 91.3 67 67.2
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 5.1e-17 90.9 63 68.3
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 6.6e-17 90.5 70 58.6
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 6.6e-17 90.5 67 64.2
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 8.6e-17 90.1 75 64.0
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 1.1e-16 89.7 63 66.7
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.9e-16 89.0 67 68.7
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.9e-16 89.0 67 68.7
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.9e-16 89.0 67 68.7
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 3.3e-16 88.2 67 68.7
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 7.3e-16 87.0 71 62.0
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 9.5e-16 86.7 72 59.7
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.2e-15 86.3 67 65.7
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 1.6e-15 85.9 73 61.6
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 1.6e-15 85.9 65 70.8
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 2.8e-15 85.1 88 56.8
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 4.7e-15 84.3 84 52.4
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 4.7e-15 84.3 62 67.7
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 8.1e-15 83.6 66 62.1
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 1.4e-14 82.8 66 69.7
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 1.8e-14 82.4 69 62.3
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 2.4e-14 82.0 72 61.1
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 3.1e-14 81.6 70 61.4
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 5.2e-14 80.9 68 63.2
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 5.2e-14 80.9 68 63.2
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 6.8e-14 80.5 54 70.4
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 2.0e-13 79.0 56 67.9
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 2.0e-13 79.0 73 60.3
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 2.6e-13 78.6 67 64.2
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 1.3e-12 76.3 64 54.7
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.3e-12 76.3 67 56.7
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.3e-12 76.3 67 56.7
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 1.7e-12 75.9 73 53.4
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 2.9e-12 75.1 63 58.7
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.1e-11 73.2 74 52.7
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 3.5e-10 68.2 45 68.9
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 5.1e-09 64.3 43 74.4
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 5.6e-08 60.8 75 44.0
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 7.3e-08 60.5 38 78.9
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 8.1e-07 57.0 45 55.6


User provided reference genes

Program Settings