Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 0.0e+00 1802.3 905 100.0
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1609.7 922 88.4
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1599.7 917 89.0
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1531.9 910 83.8
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1499.2 919 82.0
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1470.7 920 82.4
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1428.3 906 78.8
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1415.6 915 78.9
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1389.8 943 75.4
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1366.7 924 75.0
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1317.8 929 71.9
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1310.4 925 72.1
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1305.0 935 71.4
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1300.8 917 71.2
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1298.5 917 71.3
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1295.4 926 70.4
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1289.6 928 70.4
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1286.9 928 71.0
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1281.9 957 68.5
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1273.1 924 69.9
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1268.8 923 69.8
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1257.3 919 70.0
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1256.9 916 70.3
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1255.7 924 69.0
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1249.2 917 68.0
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1246.5 920 68.7
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1245.7 923 69.1
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1244.2 914 68.4
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1241.9 916 69.1
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1237.6 916 68.6
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1236.1 922 69.2
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1230.3 906 68.0
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1229.5 906 68.0
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1229.2 906 68.1
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1226.1 928 68.5
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1218.0 944 67.4
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1211.1 931 65.8
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1208.4 913 68.3
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1207.6 891 69.7
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1202.6 899 68.4
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1202.2 909 68.3
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1196.4 914 68.4
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1194.9 1127 56.5
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1194.1 899 67.7
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1193.7 930 67.5
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1185.2 923 66.1
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1183.3 903 66.1
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1178.7 923 66.1
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1177.5 897 67.2
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1176.8 901 66.5
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1176.4 899 66.4
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1175.6 909 65.7
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1175.6 923 65.8
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1175.2 925 65.4
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1169.5 904 66.4
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1165.6 889 65.8
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1165.2 889 65.8
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1164.1 918 65.6
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1163.7 900 66.1
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1162.5 957 63.3
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1156.7 928 65.2
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1156.7 923 65.7
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1154.0 933 64.3
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1153.3 904 65.2
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1151.7 930 64.5
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1151.7 907 64.9
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1151.3 910 64.3
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1147.9 911 65.0
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1147.5 912 63.8
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1147.5 934 64.6
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1146.7 937 63.6
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1143.6 933 64.0
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1142.5 919 64.5
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1137.9 924 63.9
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1127.9 905 65.0
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1124.8 932 64.7
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1124.4 882 65.1
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1123.2 845 68.6
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1120.1 913 63.6
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1109.7 954 60.7
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1106.3 902 63.7
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1101.7 913 62.5
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1090.9 913 61.4
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1090.1 862 65.4
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 0.0e+00 1088.2 865 65.1
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1080.1 916 60.6
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 1.6e-310 1069.3 925 61.8
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 3.7e-307 1058.1 871 63.8
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 7.2e-303 1043.9 908 59.1
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 3.0e-301 1038.5 923 58.8
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 7.5e-300 1033.9 901 59.7
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 7.8e-297 1023.8 901 58.9
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 9.5e-295 1016.9 905 58.0
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 7.8e-289 997.3 747 68.4
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 2.3e-288 995.7 892 58.6
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 4.3e-287 991.5 809 63.8
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 1.6e-286 989.6 575 88.7
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 6.4e-283 977.6 933 56.4
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 1.7e-280 969.5 904 56.4
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 2.5e-279 965.7 903 56.3
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 9.5e-279 963.8 900 55.3
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 3.6e-278 961.8 901 56.3
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 3.6e-278 961.8 901 56.3
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 1.8e-277 959.5 901 56.0
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 3.2e-274 948.7 890 55.5
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 1.3e-272 943.3 914 57.2
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 5.8e-252 874.8 608 73.7
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 5.8e-236 821.6 819 52.0
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 2.7e-233 812.8 576 73.4
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 2.2e-230 803.1 585 71.5
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 3.1e-229 799.3 604 69.4
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 2.6e-228 796.2 669 62.9
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 1.7e-227 793.5 918 50.4
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 4.3e-223 778.9 909 46.6
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 1.7e-222 776.9 925 47.9
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.9e-220 768.5 744 58.5
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 9.4e-218 761.1 906 45.6
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.6e-209 733.8 490 73.9
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 1.6e-204 717.2 422 87.4
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 1.5e-202 710.7 420 84.8
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 2.1e-201 706.8 1016 42.6
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 7.0e-197 691.8 574 65.3
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 1.1e-181 641.3 557 60.3
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 3.3e-178 629.8 405 78.3
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 3.3e-178 629.8 447 72.0
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 1.7e-171 607.4 660 51.4
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 1.1e-170 604.7 336 89.6
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 4.6e-156 556.2 1089 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 6.6e-155 552.4 602 52.0
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.6e-116 424.9 404 58.2
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 1.8e-115 421.4 425 53.2
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 1.1e-109 402.1 339 61.7
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 4.2e-109 400.2 317 61.8
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 2.1e-108 397.9 338 60.4
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 2.6e-98 364.4 214 79.9
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 1.3e-97 362.1 331 55.6
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 5.5e-93 346.7 356 50.8
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 3.7e-81 307.4 237 62.4
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 2.0e-79 301.6 189 75.7
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 4.7e-76 290.4 313 48.2
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 4.1e-72 277.3 160 78.8
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.0e-67 262.7 321 46.1
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 1.7e-62 245.4 253 54.9
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 2.3e-62 245.0 531 36.2
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.6e-61 240.4 180 67.2
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 3.4e-50 204.5 137 77.4
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 7.8e-47 193.4 129 67.4
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 2.6e-42 178.3 171 49.1
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 1.2e-18 99.8 64 70.3
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 1.2e-18 99.8 371 25.1
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 4.5e-18 97.8 62 71.0
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 4.5e-18 97.8 62 71.0
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 2.2e-17 95.5 62 69.4
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 3.2e-16 91.7 58 70.7
TPR.G35747 Trifolium pratense HOM05D004002 ORTHO05D004668 1.3e-12 79.7 84 54.8
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 3.5e-07 61.6 121 42.1
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 6.7e-06 57.4 48 58.3


User provided reference genes

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