Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 1.1e-141 506.5 241 100.0
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 2.6e-130 468.8 241 91.7
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 4.1e-120 434.9 240 83.8
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 1.5e-114 416.4 238 81.1
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 6.6e-94 347.8 246 66.3
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 2.0e-90 336.3 248 64.1
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 2.0e-90 336.3 245 63.7
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 2.6e-90 335.9 245 63.7
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 1.4e-88 330.1 235 66.4
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 5.4e-88 328.2 252 62.3
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 2.1e-87 326.2 246 61.8
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 1.0e-86 323.9 252 60.3
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 2.3e-78 296.2 226 63.3
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 9.0e-67 257.7 244 50.4
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 3.4e-66 255.8 241 51.0
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 5.8e-66 255.0 230 51.7
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 1.3e-65 253.8 236 50.8
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 1.9e-64 250.0 243 47.7
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 4.2e-64 248.8 243 49.8
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 1.0e-62 244.2 235 48.5
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 1.3e-62 243.8 226 51.3
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.7e-62 243.4 236 47.9
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 1.7e-62 243.4 230 50.9
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.3e-62 243.0 235 50.6
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 3.0e-62 242.7 253 46.6
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.9e-61 240.0 236 47.5
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 1.3e-60 237.3 256 46.9
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.3e-60 237.3 245 48.2
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.6e-60 235.7 238 45.8
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 6.2e-60 235.0 225 50.2
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 6.2e-60 235.0 248 46.0
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 3.1e-59 232.6 239 47.7
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 4.0e-59 232.3 226 50.0
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 6.9e-59 231.5 250 43.6
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 2.0e-58 229.9 250 45.2
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 3.4e-58 229.2 238 45.4
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 4.5e-58 228.8 231 48.5
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 5.8e-58 228.4 242 45.0
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 9.9e-58 227.6 252 45.2
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 1.3e-57 227.3 229 46.7
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 2.2e-57 226.5 248 44.4
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 3.8e-57 225.7 244 46.7
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 4.9e-57 225.3 244 45.9
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 6.4e-57 224.9 239 46.4
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 6.4e-57 224.9 244 45.1
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 6.4e-57 224.9 239 45.2
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.4e-56 223.8 241 46.9
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 1.4e-56 223.8 234 46.6
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 5.5e-56 221.9 237 47.7
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 9.3e-56 221.1 242 46.3
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 9.3e-56 221.1 238 46.6
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 1.2e-55 220.7 223 47.1
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 1.6e-55 220.3 244 44.7
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 4.6e-55 218.8 244 45.1
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 1.8e-54 216.9 236 44.9
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 2.3e-54 216.5 256 41.4
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 3.9e-54 215.7 259 41.7
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 3.9e-54 215.7 229 42.4
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 6.7e-54 214.9 234 45.7
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 1.6e-52 210.3 235 45.5
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 2.8e-52 209.5 233 43.8
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 1.8e-51 206.8 238 45.4
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.8e-51 206.8 223 45.3
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.1e-51 206.1 223 45.3
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 4.0e-51 205.7 240 43.8
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 9.0e-51 204.5 239 46.0
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 9.0e-51 204.5 237 45.6
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 9.0e-51 204.5 237 45.6
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 1.5e-50 203.8 234 43.6
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 2.6e-50 203.0 251 41.4
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 2.6e-50 203.0 231 43.3
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 3.4e-50 202.6 237 43.9
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 3.4e-50 202.6 234 44.4
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 2.2e-49 199.9 237 41.4
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 2.9e-49 199.5 230 44.8
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 2.9e-49 199.5 237 45.1
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 2.9e-49 199.5 237 45.1
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 6.5e-49 198.4 228 43.9
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 1.4e-48 197.2 242 42.6
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.4e-48 197.2 223 43.5
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 9.3e-48 194.5 236 41.5
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 1.6e-47 193.7 252 38.9
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.6e-47 192.2 245 39.2
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 6.0e-47 191.8 245 39.2
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 5.1e-46 188.7 190 48.9
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 1.1e-45 187.6 226 46.5
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 5.7e-45 185.3 245 40.8
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 7.4e-45 184.9 174 47.1
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 9.6e-45 184.5 240 41.2
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 1.4e-43 180.6 171 49.7
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.2e-41 173.3 227 41.0
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 5.0e-41 172.2 174 47.1
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 5.5e-40 168.7 154 53.2
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 7.2e-40 168.3 264 33.7
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 3.6e-39 166.0 231 36.8
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 3.9e-38 162.5 225 38.2
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 1.3e-36 157.5 242 36.0
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 4.1e-35 152.5 232 33.2
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 6.9e-35 151.8 247 36.0
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 7.7e-34 148.3 158 46.8
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 1.4e-32 144.1 159 45.3
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 9.4e-32 141.4 159 44.7
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 1.6e-31 140.6 298 30.2
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 2.7e-31 139.8 155 41.9
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 2.3e-30 136.7 154 43.5
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 1.1e-29 134.4 296 29.7
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 3.3e-29 132.9 157 41.4
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 1.4e-22 110.9 353 23.8
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 3.5e-18 96.3 85 51.8
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 3.5e-18 96.3 110 45.5
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 2.2e-17 93.6 85 51.8
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 9.4e-16 88.2 97 41.2
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.6e-15 87.4 87 47.1
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 2.1e-15 87.0 89 47.2
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 2.3e-14 83.6 78 44.9
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 5.2e-14 82.4 149 32.2
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 6.7e-14 82.0 139 36.7
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 2.0e-13 80.5 70 48.6
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 1.8e-11 73.9 104 34.6
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 4.1e-11 72.8 64 51.6
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 1.1e-08 64.7 48 56.2


User provided reference genes

Program Settings