Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1676.8 844 100.0
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1457.6 803 89.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 817 87.6
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1437.2 788 89.3
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1416.4 803 86.2
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1410.2 803 85.8
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1408.7 803 85.8
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1399.0 806 85.5
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1387.9 803 84.6
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1383.2 803 83.8
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1380.2 803 83.7
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1379.8 808 83.2
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1375.5 808 83.4
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1375.1 806 83.6
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1374.0 803 83.9
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1373.6 803 83.1
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1373.2 803 83.6
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1372.1 803 82.6
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1372.1 803 82.9
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1371.7 803 83.2
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1371.3 803 82.9
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1371.3 803 83.2
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1370.5 803 82.7
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1369.4 803 82.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1369.0 806 82.8
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1368.2 806 82.9
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1367.1 803 82.9
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1367.1 806 82.6
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1366.3 803 82.8
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1366.3 803 82.8
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1365.9 815 82.5
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1364.7 803 83.1
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1364.7 806 82.4
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1364.0 815 81.8
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1362.4 803 82.2
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1362.1 803 82.1
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1360.1 803 82.4
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1359.0 810 82.1
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1358.2 803 81.9
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1357.8 803 82.8
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 803 82.2
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1356.3 803 81.9
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 806 82.6
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 823 79.7
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1350.9 803 81.8
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1350.5 830 80.4
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1350.1 809 81.3
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1344.3 803 81.3
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1343.6 803 80.8
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1342.8 803 81.4
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1341.6 803 81.3
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1340.5 832 79.1
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1340.5 803 80.8
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1339.3 803 81.7
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1338.9 803 81.3
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1338.6 834 80.6
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1338.6 813 79.6
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1337.0 806 80.6
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1336.6 784 84.2
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1336.2 803 80.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1333.5 807 80.5
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1333.2 806 80.3
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1331.2 813 79.5
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1330.9 803 80.2
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1330.5 823 78.6
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1330.5 823 78.6
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1328.9 803 80.8
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1328.5 803 80.4
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1328.2 803 80.7
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1328.2 803 80.4
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1327.8 803 80.9
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1326.2 802 80.8
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1325.1 806 79.9
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1325.1 803 80.4
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1324.7 823 78.4
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1323.9 803 79.5
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1322.0 807 79.4
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1320.8 803 80.2
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1320.1 807 79.3
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1320.1 807 79.3
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1319.7 803 80.1
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1319.7 803 79.2
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1319.3 833 78.5
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1318.9 803 80.0
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1318.5 823 78.0
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1318.1 803 79.7
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1318.1 803 80.0
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1318.1 803 80.0
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1318.1 803 80.0
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1317.8 803 79.8
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1316.6 807 79.2
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1316.6 774 82.4
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1315.1 792 80.4
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1315.1 803 79.0
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1314.3 807 78.9
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1314.3 808 79.2
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1311.2 810 79.3
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1309.3 784 81.6
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1307.4 803 78.8
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1307.0 774 81.9
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1300.8 788 80.2
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1300.4 788 79.6
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1300.0 803 80.1
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1299.3 811 79.2
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1297.7 788 79.8
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1294.3 803 79.6
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1288.1 788 79.9
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1287.3 813 78.5
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1286.6 820 76.8
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1278.5 774 79.2
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1269.2 803 78.6
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1266.5 823 76.9
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1261.1 784 78.6
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1254.6 806 76.7
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1253.8 774 79.1
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1243.4 807 74.1
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1242.3 803 74.7
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1240.7 818 73.5
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1237.2 803 73.6
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1228.8 803 76.0
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1227.2 833 74.1
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1206.8 715 81.4
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1199.5 704 82.2
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1199.5 803 74.6
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1191.8 822 73.4
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1156.0 816 73.5
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1154.0 815 73.1
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1152.1 811 72.6
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1114.8 807 70.3
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1091.6 788 67.6
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1082.0 660 78.8
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1080.1 710 75.6
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 5.8e-312 1074.7 810 65.9
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.3e-282 976.5 562 85.2
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 1.2e-270 936.8 563 79.9
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.9e-265 919.5 817 56.5
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 3.9e-250 868.6 511 81.4
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 8.1e-240 834.3 820 55.1
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.0e-205 721.1 450 78.7
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.2e-204 716.1 426 81.9
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 2.2e-184 650.2 399 80.5
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 4.5e-182 642.5 743 48.6
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.0e-166 590.5 435 69.2
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 5.2e-146 522.7 440 62.3
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.5e-145 521.2 381 68.5
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.5e-121 441.4 267 79.4
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 6.4e-120 436.0 364 61.0
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 4.5e-105 386.7 226 83.2
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 6.7e-101 372.9 319 61.8
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 6.7e-93 346.3 232 74.6
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 4.4e-84 317.0 258 62.4
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.7e-72 278.5 353 46.2
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 4.5e-65 253.8 227 60.4
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-61 241.5 216 58.8
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.8e-58 231.9 151 76.2
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 2.8e-46 191.4 119 75.6
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 4.1e-42 177.6 268 41.8
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 7.1e-34 150.2 112 64.3
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 6.2e-30 137.1 81 82.7
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 3.1e-29 134.8 84 76.2
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 7.6e-28 130.2 83 74.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.3e-24 119.4 91 60.4
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 8.7e-24 116.7 130 52.3
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.9e-23 115.5 95 65.3
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 3.8e-19 101.3 56 80.4
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 8.4e-19 100.1 358 26.0
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-11 75.1 48 75.0
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.9e-11 74.3 49 73.5
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.9e-10 72.4 43 76.7
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.9e-10 72.4 60 60.0
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 3.2e-10 71.6 46 78.3
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 6.0e-09 67.4 36 83.3
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.8e-08 65.9 56 62.5
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.5e-07 62.8 43 67.4


User provided reference genes

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