Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 3.1e-47 191.8 123 100.0
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 7.9e-43 177.2 96 95.8
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 3.9e-42 174.9 123 75.6
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 9.6e-41 170.2 124 76.6
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 2.1e-40 169.1 95 92.6
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.4e-38 161.8 122 70.5
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.4e-38 161.8 122 70.5
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 3.4e-38 161.8 122 70.5
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 3.4e-38 161.8 95 85.3
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 9.9e-38 160.2 92 88.0
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 1.7e-37 159.5 122 69.7
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 4.9e-37 157.9 94 84.0
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 4.9e-37 157.9 94 84.0
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 4.9e-37 157.9 94 84.0
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 4.9e-37 157.9 94 84.0
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 4.9e-37 157.9 124 67.7
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 4.9e-37 157.9 130 81.5
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 4.9e-37 157.9 96 82.3
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 6.4e-37 157.5 95 82.1
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 8.4e-37 157.1 94 84.0
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 8.4e-37 157.1 94 84.0
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 8.4e-37 157.1 95 83.2
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 8.4e-37 157.1 91 87.9
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 2.4e-36 155.6 95 83.2
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 2.4e-36 155.6 95 81.1
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 2.4e-36 155.6 95 81.1
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 3.2e-36 155.2 95 82.1
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 4.2e-36 154.8 95 81.1
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 5.5e-36 154.5 92 85.9
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 5.5e-36 154.5 96 80.2
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 9.3e-36 153.7 95 81.1
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 9.3e-36 153.7 96 82.3
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 1.2e-35 153.3 92 83.7
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 1.2e-35 153.3 92 83.7
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.6e-35 152.9 95 81.1
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 1.6e-35 152.9 97 81.4
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 2.7e-35 152.1 96 77.1
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 4.6e-35 151.4 95 77.9
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.6e-35 151.4 95 77.9
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.6e-35 151.4 95 77.9
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.6e-35 151.4 95 77.9
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.6e-35 151.4 95 77.9
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 4.6e-35 151.4 96 80.2
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 7.9e-35 150.6 92 83.7
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 1.3e-34 149.8 92 79.3
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.3e-34 149.8 95 77.9
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.0e-34 148.7 95 76.8
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 3.0e-34 148.7 95 76.8
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 3.0e-34 148.7 92 79.3
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 3.9e-34 148.3 92 80.4
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 3.9e-34 148.3 96 80.2
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 8.7e-34 147.1 91 83.5
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 3.3e-33 145.2 96 77.1
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 5.6e-33 144.4 94 78.7
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 7.4e-33 144.1 92 79.3
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 9.6e-33 143.7 94 75.5
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.3e-32 143.3 95 74.7
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.3e-32 143.3 92 73.9
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 1.6e-32 142.9 94 74.5
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 2.1e-32 142.5 91 80.2
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 2.8e-32 142.1 92 78.3
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 2.8e-32 142.1 92 79.3
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 3.7e-32 141.7 92 78.3
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 3.7e-32 141.7 95 74.7
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 3.7e-32 141.7 92 75.0
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 6.2e-32 141.0 95 75.8
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 1.1e-31 140.2 92 76.1
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 1.4e-31 139.8 92 77.2
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.8e-31 139.4 92 77.2
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 2.4e-31 139.0 96 72.9
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 4.0e-31 138.3 96 72.9
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 5.3e-31 137.9 94 72.3
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 5.3e-31 137.9 94 72.3
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 6.9e-31 137.5 92 73.9
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 9.0e-31 137.1 94 72.3
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 1.2e-30 136.7 95 73.7
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 2.0e-30 136.0 95 74.7
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 2.0e-30 136.0 92 73.9
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 4.5e-30 134.8 94 73.4
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 1.0e-29 133.7 94 70.2
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 2.2e-29 132.5 91 71.4
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 2.9e-29 132.1 95 67.4
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.9e-28 129.4 96 66.7
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 2.5e-28 129.0 93 73.1
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 7.1e-28 127.5 93 73.1
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 9.3e-28 127.1 92 67.4
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 2.7e-27 125.6 94 70.2
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 3.5e-27 125.2 95 69.5
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 4.6e-27 124.8 94 69.1
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 6.0e-27 124.4 84 75.0
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 7.9e-27 124.0 95 68.4
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.0e-26 123.6 92 65.2
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.8e-26 122.9 91 71.4
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.8e-26 122.9 91 71.4
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 3.9e-26 121.7 98 65.3
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 3.9e-26 121.7 75 82.7
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 5.1e-26 121.3 98 67.3
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 1.9e-25 119.4 94 63.8
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 2.5e-25 119.0 94 64.9
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 2.5e-25 119.0 92 66.3
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 4.3e-25 118.2 98 65.3
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 2.2e-24 115.9 98 63.3
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 3.1e-23 112.1 94 60.6
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 3.1e-23 112.1 94 60.6
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 6.9e-23 110.9 75 77.3
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 1.5e-22 109.8 94 60.6
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 3.4e-22 108.6 95 60.0
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 2.2e-21 105.9 98 63.3
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 1.0e-18 97.1 96 53.1
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 1.8e-18 96.3 91 56.0
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 4.3e-17 91.7 95 51.6
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 5.7e-17 91.3 94 52.1
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 7.4e-17 90.9 97 50.5
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 3.7e-16 88.6 96 53.1
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 3.4e-14 82.0 74 59.5
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 2.9e-13 79.0 98 49.0
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.9e-12 76.3 86 45.3
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 2.6e-09 65.9 57 57.9


User provided reference genes

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