Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.4e-165 586.3 314 100.0
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.3e-28 131.3 332 36.1
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.8e-19 100.9 78 98.7
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 2.2e-17 94.0 136 55.9
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 5.0e-17 92.8 80 87.5
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 5.0e-17 92.8 79 88.6
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 5.0e-17 92.8 78 93.6
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 6.5e-17 92.4 86 81.4
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 8.5e-17 92.0 79 87.3
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 2.5e-16 90.5 79 87.3
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 1.2e-15 88.2 77 83.1
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 1.6e-15 87.8 78 87.2
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.7e-15 87.0 77 90.9
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 3.6e-15 86.7 86 79.1
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 4.7e-15 86.3 78 83.3
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 4.7e-15 86.3 82 78.0
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 4.7e-15 86.3 86 70.9
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 4.7e-15 86.3 78 78.2
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 6.1e-15 85.9 86 70.9
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.0e-14 85.1 86 70.9
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.0e-14 85.1 81 72.8
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.4e-14 84.7 86 70.9
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.4e-14 84.7 80 81.2
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 1.8e-14 84.3 81 76.5
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 2.3e-14 84.0 86 69.8
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 2.3e-14 84.0 79 84.8
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 2.3e-14 84.0 79 84.8
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 3.0e-14 83.6 82 75.6
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 3.0e-14 83.6 86 69.8
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 3.9e-14 83.2 77 84.4
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 3.9e-14 83.2 78 80.8
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 5.2e-14 82.8 77 87.0
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 5.2e-14 82.8 77 87.0
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 6.7e-14 82.4 78 80.8
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 6.7e-14 82.4 79 83.5
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 1.1e-13 81.6 85 70.6
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.1e-13 81.6 86 69.8
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.5e-13 81.3 85 69.4
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.0e-13 80.9 80 76.2
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.0e-13 80.9 80 76.2
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 2.6e-13 80.5 81 81.5
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.6e-13 80.5 81 75.3
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.6e-13 80.5 81 75.3
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.6e-13 80.5 81 61.7
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 2.6e-13 80.5 80 78.8
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 3.3e-13 80.1 80 75.0
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 3.3e-13 80.1 78 78.2
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 4.4e-13 79.7 77 84.4
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 4.4e-13 79.7 77 80.5
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 4.4e-13 79.7 78 80.8
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 4.4e-13 79.7 80 73.8
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.4e-13 79.7 80 77.5
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 5.7e-13 79.3 87 46.0
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 5.7e-13 79.3 87 46.0
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 5.7e-13 79.3 87 46.0
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 5.7e-13 79.3 87 46.0
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 5.7e-13 79.3 41 82.9
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 5.7e-13 79.3 76 78.9
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 5.7e-13 79.3 76 80.3
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 5.7e-13 79.3 41 82.9
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 7.4e-13 79.0 80 76.2
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 7.4e-13 79.0 77 79.2
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 7.4e-13 79.0 79 74.7
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 7.4e-13 79.0 77 81.8
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 7.4e-13 79.0 79 73.4
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 7.4e-13 79.0 40 85.0
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 9.7e-13 78.6 79 78.5
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 9.7e-13 78.6 80 81.2
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 9.7e-13 78.6 80 67.5
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.3e-12 78.2 87 44.8
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 1.3e-12 78.2 76 81.6
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.3e-12 78.2 76 81.6
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.3e-12 78.2 76 81.6
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.3e-12 78.2 76 81.6
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.3e-12 78.2 76 81.6
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.3e-12 78.2 76 81.6
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 1.3e-12 78.2 77 77.9
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.3e-12 78.2 85 70.6
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.3e-12 78.2 77 77.9
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.7e-12 77.8 77 77.9
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.7e-12 77.8 79 79.7
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.7e-12 77.8 86 41.9
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 1.7e-12 77.8 77 79.2
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 2.2e-12 77.4 79 77.2
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 2.8e-12 77.0 79 45.6
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 2.8e-12 77.0 80 80.0
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 3.7e-12 76.6 79 78.5
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 3.7e-12 76.6 80 80.0
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 3.7e-12 76.6 81 75.3
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 4.8e-12 76.3 79 63.3
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 4.8e-12 76.3 79 62.0
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 4.8e-12 76.3 79 77.2
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 4.8e-12 76.3 79 77.2
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 6.3e-12 75.9 83 55.4
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 6.3e-12 75.9 78 79.5
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 6.3e-12 75.9 80 72.5
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 8.2e-12 75.5 79 75.9
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 8.2e-12 75.5 41 80.5
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.1e-11 75.1 76 75.0
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.4e-11 74.7 41 78.0
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.4e-11 74.7 78 75.6
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 1.8e-11 74.3 41 75.6
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.8e-11 74.3 41 75.6
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 2.4e-11 73.9 79 69.6
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 2.4e-11 73.9 80 78.8
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.4e-11 73.9 79 77.2
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 3.1e-11 73.6 87 63.2
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 3.1e-11 73.6 87 63.2
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 3.1e-11 73.6 87 63.2
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 3.1e-11 73.6 87 63.2
Psat3g057640 Pisum sativum HOM05D001839 ORTHO05D005881 3.1e-11 73.6 96 52.1
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 4.1e-11 73.2 79 68.4
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 4.1e-11 73.2 76 76.3
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 9.1e-11 72.0 81 69.1
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.5e-10 70.1 85 67.1
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 5.9e-10 69.3 79 73.4
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 5.9e-10 69.3 42 66.7
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 5.9e-10 69.3 39 74.4
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.0e-09 68.6 40 72.5
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.0e-09 68.6 40 72.5
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.7e-09 67.8 41 65.9
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.9e-09 67.0 40 70.0
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-09 66.2 86 39.5
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-09 66.2 86 39.5
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-09 66.2 86 39.5
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 5.0e-09 66.2 80 66.2
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 6.5e-09 65.9 40 67.5
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 8.5e-09 65.5 40 70.0
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-08 64.7 39 66.7
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-08 64.7 39 66.7
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.9e-08 64.3 33 81.8
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.9e-08 64.3 33 81.8
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.5e-08 63.9 71 46.5
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 7.2e-08 62.4 43 60.5
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 7.2e-08 62.4 43 60.5
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.7e-07 60.5 87 63.2
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 3.6e-07 60.1 37 67.6
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 2.3e-06 57.4 104 31.7
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.3e-06 57.4 104 31.7


User provided reference genes

Program Settings