Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.2e-35 152.5 74 100.0
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 7.1e-31 136.7 73 87.7
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 7.3e-28 126.7 74 83.8
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.2e-25 119.4 66 84.8
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 4.4e-25 117.5 66 83.3
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 5.8e-25 117.1 68 83.8
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 9.9e-25 116.3 67 85.1
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.9e-24 114.8 67 79.1
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 3.8e-24 114.4 68 79.4
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.4e-23 112.5 65 81.5
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.9e-23 112.1 67 76.1
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 4.2e-23 110.9 69 79.7
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 7.1e-23 110.2 65 78.5
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 9.3e-23 109.8 66 77.3
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.2e-22 109.4 68 76.5
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.6e-22 109.0 66 77.3
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 3.5e-22 107.8 67 76.1
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 7.8e-22 106.7 66 75.8
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.0e-21 106.3 68 75.0
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.7e-21 105.5 66 77.3
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 5.1e-21 104.0 67 77.6
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 5.1e-21 104.0 67 77.6
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 5.1e-21 104.0 70 75.7
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 6.6e-21 103.6 71 70.4
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 1.5e-20 102.4 66 75.8
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.5e-20 102.4 68 72.1
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.9e-20 102.1 72 73.6
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 2.5e-20 101.7 67 76.1
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 2.5e-20 101.7 69 72.5
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 2.1e-19 98.6 65 72.3
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 2.1e-19 98.6 66 75.8
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.1e-19 98.6 68 70.6
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 4.8e-19 97.4 68 70.6
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 8.1e-19 96.7 74 67.6
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 8.1e-19 96.7 76 63.2
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.1e-18 96.3 76 64.5
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.4e-18 95.9 69 65.2
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 1.8e-18 95.5 69 71.0
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 3.1e-18 94.7 67 73.1
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.3e-18 94.0 66 65.2
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 6.9e-18 93.6 69 69.6
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 6.9e-18 93.6 64 65.6
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 9.0e-18 93.2 68 69.1
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.2e-17 92.8 75 64.0
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.2e-17 92.8 70 67.1
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 2.0e-17 92.0 69 66.7
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 3.4e-17 91.3 64 71.9
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 5.8e-17 90.5 69 71.0
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 5.8e-17 90.5 69 69.6
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.8e-17 90.5 69 69.6
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 7.6e-17 90.1 72 62.5
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 7.6e-17 90.1 72 62.5
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 9.9e-17 89.7 70 62.9
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 1.3e-16 89.4 69 71.0
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 1.3e-16 89.4 77 61.0
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 1.7e-16 89.0 72 61.1
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.7e-16 89.0 69 68.1
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 1.7e-16 89.0 76 60.5
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.7e-16 89.0 63 65.1
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.7e-16 89.0 72 61.1
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.2e-16 88.6 68 69.1
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.2e-16 88.6 69 69.6
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 3.8e-16 87.8 65 66.2
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 4.9e-16 87.4 77 58.4
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 4.9e-16 87.4 66 65.2
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 6.4e-16 87.0 79 57.0
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 1.1e-15 86.3 79 57.0
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 1.1e-15 86.3 71 62.0
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.1e-15 86.3 66 68.2
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.4e-15 85.9 79 62.0
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 1.9e-15 85.5 67 67.2
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 2.4e-15 85.1 78 56.4
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 3.2e-15 84.7 74 58.1
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 3.2e-15 84.7 74 58.1
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 3.2e-15 84.7 74 58.1
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 5.4e-15 84.0 74 56.8
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 5.4e-15 84.0 74 56.8
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 5.4e-15 84.0 74 56.8
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 5.4e-15 84.0 74 58.1
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 5.4e-15 84.0 74 56.8
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 5.4e-15 84.0 74 56.8
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 7.1e-15 83.6 72 59.7
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 7.1e-15 83.6 74 56.8
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 9.3e-15 83.2 77 54.5
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 9.3e-15 83.2 74 55.4
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 9.3e-15 83.2 77 54.5
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 9.3e-15 83.2 74 55.4
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 9.3e-15 83.2 74 55.4
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.2e-14 82.8 67 58.2
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.2e-14 82.8 64 62.5
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.2e-14 82.8 74 56.8
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.6e-14 82.4 72 59.7
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.6e-14 82.4 65 61.5
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.1e-14 82.0 74 55.4
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.1e-14 82.0 74 55.4
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.7e-14 81.6 67 61.2
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.7e-14 81.6 76 56.6
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.5e-14 81.3 77 53.2
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 3.5e-14 81.3 74 55.4
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.6e-14 80.9 78 55.1
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.6e-14 80.9 78 55.1
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 4.6e-14 80.9 76 56.6
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 4.6e-14 80.9 78 56.4
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 6.0e-14 80.5 64 65.6
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 6.0e-14 80.5 68 58.8
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-13 79.7 79 54.4
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-13 79.7 79 54.4
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.0e-13 79.7 79 54.4
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.3e-13 79.3 79 54.4
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.3e-13 78.6 82 52.4
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 3.0e-13 78.2 77 54.5
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 3.0e-13 78.2 79 53.2
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 3.0e-13 78.2 79 53.2
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 3.0e-13 78.2 79 53.2
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 3.0e-13 78.2 65 60.0
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 3.9e-13 77.8 80 52.5
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 3.9e-13 77.8 80 52.5
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 3.9e-13 77.8 65 58.5
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 3.9e-13 77.8 64 60.9
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 3.9e-13 77.8 65 55.4
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 5.1e-13 77.4 79 53.2
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 5.1e-13 77.4 78 52.6
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 5.1e-13 77.4 79 53.2
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 5.1e-13 77.4 79 53.2
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 5.1e-13 77.4 78 52.6
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 5.1e-13 77.4 79 53.2
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 5.1e-13 77.4 62 58.1
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 5.1e-13 77.4 69 56.5
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 8.7e-13 76.6 80 52.5
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 8.7e-13 76.6 64 54.7
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.9e-12 75.5 60 65.0
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 2.5e-12 75.1 57 66.7
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 4.3e-12 74.3 64 59.4
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 5.6e-12 73.9 64 59.4
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.1e-11 72.0 66 57.6
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.4e-10 69.3 70 58.6
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.4e-10 69.3 65 55.4
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.8e-10 68.9 63 54.0
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.8e-10 68.9 70 52.9
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 5.3e-10 67.4 83 44.6
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.3e-10 67.4 78 46.2
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 6.9e-10 67.0 65 44.6
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 9.0e-10 66.6 82 47.6
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.2e-09 66.2 78 47.4
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.2e-09 66.2 75 50.7
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.5e-09 65.9 64 53.1
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 3.4e-09 64.7 74 45.9
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 3.5e-06 54.7 73 43.8
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 7.9e-06 53.5 53 58.5


User provided reference genes

Program Settings