Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 3392.8 1774 100.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2878.6 1827 84.1
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2556.6 1615 82.4
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2520.3 1624 80.7
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2441.0 1619 79.4
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2421.0 1619 78.8
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2281.1 1784 70.0
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2233.0 1772 68.5
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2233.0 1772 68.5
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 1969.5 1382 76.8
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 1884.0 1603 62.3
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1845.9 1634 60.8
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 1844.7 1757 57.7
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1833.9 1714 58.3
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 1830.5 1805 56.6
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 1820.4 1664 60.3
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 1815.4 1587 61.4
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 1815.0 1675 59.3
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 1809.3 1780 57.1
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 1805.8 1574 62.0
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1804.3 1626 61.2
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1800.8 1798 56.4
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 1800.4 1621 60.0
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1800.0 1623 60.0
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1799.6 1825 55.4
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 1798.1 1691 58.1
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 1797.7 1800 57.1
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1791.5 1671 58.7
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 1787.7 1701 57.7
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1781.9 1629 59.5
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 1773.4 1666 59.7
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1716.8 1374 66.0
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 1702.6 1545 59.2
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 1680.6 1775 53.5
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1673.7 1825 54.4
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 1668.3 1620 56.6
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 1650.6 1714 54.8
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 1639.0 1685 56.0
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1635.5 1753 53.6
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1631.7 1688 53.9
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1631.7 1646 55.4
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 1628.2 1688 53.9
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1622.4 1595 56.6
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 1621.3 1711 52.9
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 1621.3 1535 57.7
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 1617.8 1747 53.6
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1617.4 1712 52.7
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 1617.4 1899 51.4
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 1610.1 1519 57.3
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 1609.0 1527 56.8
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 1603.2 1523 56.5
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 1602.8 1524 57.2
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1600.1 1689 53.8
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 1599.7 1609 54.4
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 1597.8 1641 53.4
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 1597.0 1557 55.5
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1588.9 1594 55.3
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 1587.8 1771 51.9
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 1587.4 1827 51.3
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 1583.5 1516 55.9
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 1580.1 1727 51.8
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1576.2 1644 52.9
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 1576.2 1734 51.8
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 1570.1 1674 53.3
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 1562.4 1412 58.6
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1553.9 1112 71.1
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 1545.4 1812 50.4
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 1542.3 1859 49.6
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 1542.3 1591 53.9
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 1529.6 1638 52.9
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 1527.7 1863 49.6
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 1526.5 1527 54.9
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 1488.4 1802 49.0
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 1483.0 1790 49.0
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1454.1 1606 51.8
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1450.6 1778 48.1
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1433.7 1596 50.6
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 1418.7 1020 73.9
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 1394.0 926 75.7
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1238.4 1612 45.5
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1202.6 1685 44.8
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1194.9 1192 52.7
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1187.9 1533 45.9
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1120.5 1507 44.1
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 2.1e-306 1056.6 828 66.2
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 4.0e-297 1025.8 1495 40.3
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.5e-272 944.1 1066 50.6
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 2.7e-269 933.3 1848 35.4
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 3.4e-264 916.4 601 76.9
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 5.1e-252 875.9 1478 36.5
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 1.1e-243 848.2 1526 37.0
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 5.7e-235 819.3 1270 41.8
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 3.1e-217 760.4 1559 34.1
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 6.3e-202 709.5 570 68.1
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 3.5e-200 703.7 1023 43.2
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 4.7e-189 666.8 1127 39.9
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 3.9e-183 647.1 825 47.2
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.5e-179 635.2 571 58.3
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 2.0e-171 608.2 1056 39.8
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 4.5e-147 527.3 397 65.0
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 9.7e-118 429.9 311 65.6
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 5.3e-108 397.5 264 76.9
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 1.6e-104 386.0 588 46.3
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 6.3e-101 374.0 788 34.0
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 7.7e-99 367.1 291 62.5
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.0e-98 366.7 314 57.3
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.3e-66 260.0 602 33.9
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 1.1e-65 256.9 742 28.4
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 3.7e-61 241.9 311 46.3
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 3.5e-59 235.3 179 63.7
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.5e-57 229.9 152 75.0
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.2e-53 216.1 151 71.5
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 2.1e-51 209.5 211 58.8
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 1.3e-50 206.8 181 65.7
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 1.3e-50 206.8 181 65.7
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.7e-50 206.5 770 27.3
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 2.3e-50 206.1 211 59.7
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 8.1e-40 171.0 130 71.5
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 4.2e-36 158.7 203 43.8
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 3.1e-31 142.5 146 54.1
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 2.9e-29 136.0 541 25.7
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 6.5e-29 134.8 70 92.9
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.9e-28 133.3 195 41.0
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.2e-27 130.6 309 32.7
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 2.5e-25 122.9 116 62.1
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 2.0e-22 113.2 160 43.1
Psat7g052720 Pisum sativum HOM05D004625 ORTHO05D006054 2.6e-22 112.8 170 44.1
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 5.8e-22 111.7 240 40.4
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-20 107.5 67 80.6
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 2.5e-20 106.3 68 75.0
Psat7g052560 Pisum sativum HOM05D004625 ORTHO05D006054 3.2e-20 105.9 170 42.4
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.5e-17 97.1 55 81.8
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 1.5e-17 97.1 610 23.9
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 7.4e-17 94.7 68 67.6
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.2e-16 93.2 61 67.2
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 4.1e-15 89.0 54 68.5
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 1.2e-14 87.4 68 64.7
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.9e-13 82.8 75 58.7
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 2.9e-13 82.8 66 60.6
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 2.9e-13 82.8 153 34.6
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 1.4e-12 80.5 53 77.4
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 2.5e-12 79.7 56 75.0
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.5e-12 78.6 100 53.0
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 9.4e-12 77.8 67 64.2
arahy.Tifrunner.gnm1.ann1.5G22ZR Arachis hypogaea HOM05D021257 ORTHO05D004161 8.8e-10 71.2 81 50.6
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 4.3e-09 68.9 68 52.9
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 6.3e-08 65.1 44 77.3
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.1e-07 64.3 402 27.6


User provided reference genes

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