Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 4.0e-122 441.4 218 100.0
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 4.6e-102 374.8 218 84.4
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 3.7e-96 355.1 218 80.3
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.4e-95 353.2 218 77.5
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.7e-93 346.3 213 78.9
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 2.3e-93 345.9 208 80.3
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 8.6e-93 344.0 218 75.7
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 7.3e-92 340.9 213 78.4
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 2.1e-91 339.3 213 76.5
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.6e-91 338.6 213 76.1
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 4.7e-91 338.2 218 73.4
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 6.2e-91 337.8 218 73.4
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.0e-90 335.1 213 76.1
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.2e-89 333.6 213 77.0
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 2.1e-86 322.8 214 68.7
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 3.5e-86 322.0 218 67.0
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.3e-85 320.1 217 66.4
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 2.3e-85 319.3 217 68.2
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.3e-85 319.3 218 67.4
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 2.3e-85 319.3 218 67.4
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 2.3e-85 319.3 217 67.7
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.0e-85 318.9 218 67.0
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 5.1e-85 318.2 218 67.0
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 6.6e-85 317.8 213 68.5
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 6.6e-85 317.8 218 67.0
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.5e-84 316.6 210 72.9
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 2.5e-84 315.8 214 68.2
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 3.3e-84 315.5 216 67.6
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 4.3e-84 315.1 212 68.9
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 4.3e-84 315.1 218 66.5
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 5.6e-84 314.7 218 66.5
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 5.6e-84 314.7 212 66.0
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 7.3e-84 314.3 212 67.0
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.2e-83 313.5 219 66.7
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 2.8e-83 312.4 212 65.6
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 3.6e-83 312.0 217 68.2
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 6.2e-83 311.2 209 68.9
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 6.2e-83 311.2 213 67.6
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 8.1e-83 310.8 217 65.4
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.8e-82 309.7 217 66.4
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.3e-82 309.3 217 63.6
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.1e-82 308.9 218 67.0
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.1e-82 308.9 210 67.6
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.1e-82 308.9 218 66.1
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 5.2e-82 308.1 209 68.9
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 5.2e-82 308.1 218 65.6
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.2e-81 307.0 212 64.6
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.2e-81 307.0 219 64.8
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.5e-81 306.6 212 67.5
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.0e-81 306.2 214 65.4
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 2.6e-81 305.8 213 67.1
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.4e-81 305.4 212 64.2
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 5.8e-81 304.7 219 67.1
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 1.7e-80 303.1 218 63.3
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 3.8e-80 302.0 212 65.6
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 3.8e-80 302.0 214 64.5
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 4.9e-80 301.6 213 67.1
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 6.4e-80 301.2 214 65.4
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.4e-79 300.1 220 62.7
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.4e-79 300.1 213 66.7
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 2.4e-79 299.3 218 64.7
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 4.6e-78 295.0 212 64.2
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 6.0e-78 294.7 210 65.7
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.0e-77 293.9 211 65.9
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.3e-77 293.5 212 64.6
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 1.7e-77 293.1 216 63.0
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 3.0e-77 292.4 218 62.8
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 3.9e-77 292.0 218 63.3
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 3.9e-77 292.0 218 63.3
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 3.9e-77 292.0 218 63.3
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 5.1e-77 291.6 215 66.5
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 5.1e-77 291.6 218 63.3
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.6e-77 291.2 211 64.9
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 6.6e-77 291.2 216 62.0
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 8.6e-77 290.8 218 61.9
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 8.6e-77 290.8 218 62.4
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 8.6e-77 290.8 248 57.7
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.1e-76 290.4 212 63.7
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 1.1e-76 290.4 216 62.0
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.5e-76 289.3 216 62.0
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 7.3e-76 287.7 218 61.5
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 9.6e-76 287.3 216 61.6
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 2.8e-75 285.8 211 61.6
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 3.6e-75 285.4 217 63.6
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 8.1e-75 284.3 216 61.1
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.4e-74 283.5 216 60.6
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 4.0e-74 282.0 206 62.6
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 8.9e-74 280.8 191 66.0
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.2e-73 280.4 211 63.0
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 3.4e-73 278.9 210 63.8
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.8e-73 278.1 225 59.6
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 4.6e-70 268.5 214 58.9
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 7.8e-70 267.7 214 58.9
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.0e-69 267.3 214 59.3
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.3e-69 266.9 214 58.9
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.6e-69 264.6 209 59.8
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 7.3e-68 261.2 211 58.8
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.3e-67 260.4 205 62.9
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 4.8e-67 258.5 217 59.9
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 3.1e-66 255.8 217 56.2
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 4.0e-66 255.4 174 68.4
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.4e-65 252.3 207 55.1
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 3.4e-65 252.3 209 56.0
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 9.9e-65 250.8 204 59.3
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.4e-63 246.9 198 59.1
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 7.1e-63 244.6 193 61.7
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 6.0e-62 241.5 204 54.4
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.0e-61 239.2 198 58.6
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 6.7e-61 238.0 206 54.4
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.1e-59 233.0 159 69.2
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 1.2e-57 227.3 212 51.9
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.1e-55 220.7 152 66.4
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 4.2e-55 218.8 211 47.9
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 7.1e-55 218.0 212 50.9
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.2e-54 217.2 203 53.2
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.3e-53 213.0 144 66.0
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 6.7e-53 211.5 143 66.4
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.8e-51 206.1 140 67.9
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.8e-51 206.1 223 47.5
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.5e-49 200.3 186 50.5
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.5e-47 193.0 126 69.0
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.1e-47 191.4 238 46.2
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 3.5e-46 189.1 199 48.2
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.0e-45 187.6 171 53.2
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.6e-43 180.3 207 42.5
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.9e-42 174.9 163 51.5
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.1e-38 161.8 207 42.5
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.9e-32 142.9 110 60.9
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 2.5e-31 139.8 110 59.1
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.8e-27 126.3 204 35.3
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 9.1e-26 121.3 75 70.7
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 8.5e-24 114.8 230 31.3
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.3e-19 100.9 207 33.8
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.3e-19 100.9 138 43.5
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 4.8e-19 99.0 76 63.2
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.4e-18 97.4 211 32.2
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.6e-17 93.2 215 27.9
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.9e-17 92.0 73 58.9
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 7.7e-17 91.7 116 43.1
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 7.7e-17 91.7 116 43.1
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.2e-16 90.1 64 62.5
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 5.0e-16 89.0 116 41.4
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 3.6e-14 82.8 178 29.2
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.5e-12 77.4 49 67.3
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.0e-12 77.0 129 38.0
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.6e-12 76.6 210 26.7
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 2.2e-11 73.6 48 68.8
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 6.3e-11 72.0 50 62.0
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.0e-09 67.0 108 39.8
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.0e-08 64.7 40 70.0
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 8.5e-08 61.6 219 22.8
MCO01G611 Micromonas commoda HOM05D053327 ORTHO05D048986 1.2e-06 57.8 195 25.6
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 6.1e-06 55.5 82 36.6


User provided reference genes

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