Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 7.3e-69 263.8 141 100.0
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.3e-62 243.0 141 92.2
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 3.0e-62 241.9 141 92.2
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.3e-60 236.5 141 88.7
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 8.1e-60 233.8 141 87.9
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.4e-59 232.3 141 87.2
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 6.9e-59 230.7 138 88.4
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 9.9e-58 226.9 138 86.2
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 9.9e-58 226.9 141 87.2
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.9e-57 225.3 138 85.5
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 2.9e-57 225.3 138 85.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.2e-56 221.9 138 84.1
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 7.1e-56 220.7 138 85.5
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 7.1e-56 220.7 138 85.5
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 9.3e-56 220.3 138 83.3
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 9.3e-56 220.3 138 83.3
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.2e-55 219.9 138 86.2
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.2e-55 219.9 138 84.8
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.7e-55 218.8 138 82.6
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 4.6e-55 218.0 138 82.6
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.0e-55 217.6 138 84.8
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 6.0e-55 217.6 139 84.9
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 7.9e-55 217.2 138 84.8
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.3e-54 216.5 137 82.5
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.8e-54 216.1 138 81.9
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.3e-54 215.7 139 82.7
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 3.9e-54 214.9 138 84.1
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.1e-53 213.4 138 81.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.5e-53 213.0 138 80.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.5e-53 213.0 138 82.6
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.5e-53 213.0 139 82.0
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.5e-53 213.0 138 81.9
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.9e-53 212.6 138 84.8
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.5e-53 212.2 139 82.7
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 4.3e-53 211.5 138 81.9
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 5.6e-53 211.1 138 81.2
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 5.6e-53 211.1 138 81.2
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 7.4e-53 210.7 173 69.4
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 9.6e-53 210.3 138 81.9
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 9.6e-53 210.3 138 80.4
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 9.6e-53 210.3 139 81.3
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.3e-52 209.9 138 79.0
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.6e-52 209.5 138 80.4
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.6e-52 209.5 138 80.4
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.1e-52 209.1 138 80.4
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 2.1e-52 209.1 138 79.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.8e-52 208.8 138 81.2
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.2e-52 207.6 138 81.2
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 6.2e-52 207.6 140 80.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 6.2e-52 207.6 141 79.4
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.1e-51 206.8 139 79.1
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.4e-51 206.5 142 77.5
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.8e-51 206.1 138 80.4
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 2.4e-51 205.7 140 78.6
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 2.4e-51 205.7 138 80.4
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.4e-51 205.7 138 80.4
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 4.0e-51 204.9 140 78.6
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.0e-51 204.9 143 79.0
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 4.0e-51 204.9 138 78.3
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 5.3e-51 204.5 141 79.4
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 9.0e-51 203.8 140 78.6
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 9.0e-51 203.8 143 78.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.5e-50 201.4 138 77.5
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 4.5e-50 201.4 138 77.5
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.7e-49 199.5 138 76.1
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.9e-49 198.7 140 76.4
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.9e-49 198.7 138 76.1
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.8e-49 198.4 138 75.4
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.9e-49 198.0 139 77.7
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 6.4e-49 197.6 138 76.8
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.1e-48 196.8 139 76.3
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.1e-48 196.8 138 78.3
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.9e-48 196.1 139 76.3
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.4e-48 195.7 138 74.6
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 2.4e-48 195.7 138 75.4
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 2.4e-48 195.7 138 75.4
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.2e-48 195.3 139 77.0
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 5.5e-48 194.5 146 72.6
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 1.2e-47 193.4 140 75.0
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 4.6e-47 191.4 139 74.1
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.6e-47 191.4 143 70.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 7.9e-47 190.7 140 75.7
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.0e-46 190.3 147 72.1
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.8e-46 189.5 139 73.4
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.3e-46 189.1 163 66.3
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.9e-46 188.3 143 68.5
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 5.1e-46 188.0 148 72.3
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 5.1e-46 188.0 150 70.7
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 5.1e-46 188.0 150 70.7
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 6.7e-46 187.6 139 73.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 2.5e-45 185.7 115 86.1
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 2.5e-45 185.7 168 63.1
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 3.3e-45 185.3 147 67.3
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.3e-45 185.3 159 66.0
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 4.3e-45 184.9 145 67.6
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 9.6e-45 183.7 140 73.6
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 2.8e-44 182.2 152 67.8
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 6.2e-44 181.0 139 71.9
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 6.2e-44 181.0 151 68.2
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 8.1e-44 180.6 135 74.1
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 8.1e-44 180.6 138 73.2
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-43 180.3 138 70.3
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.4e-43 179.9 154 66.9
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-43 179.9 154 66.9
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.8e-43 179.5 176 60.2
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.5e-42 176.4 138 71.7
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.4e-42 175.3 113 82.3
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 4.5e-42 174.9 138 68.1
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.7e-41 172.9 137 70.8
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 6.5e-41 171.0 113 82.3
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 4.6e-39 164.9 135 69.6
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 4.6e-39 164.9 137 64.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.1e-37 160.2 85 98.8
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 4.3e-37 158.3 137 60.6
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 9.6e-37 157.1 137 61.3
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 3.7e-36 155.2 85 95.3
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 4.8e-36 154.8 113 74.3
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.8e-35 152.9 167 52.7
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.8e-35 152.9 119 70.6
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.1e-35 151.8 116 72.4
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.4e-34 148.7 113 74.3
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-33 146.4 135 63.0
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.2e-33 146.0 128 67.2
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 1.1e-32 143.7 137 56.2
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.4e-32 143.3 135 63.7
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.6e-31 139.8 131 61.1
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 4.6e-31 138.3 172 50.0
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 6.1e-31 137.9 109 71.6
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 2.3e-30 136.0 97 76.3
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.5e-29 133.3 137 59.1
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.6e-28 129.8 155 53.5
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.1e-27 125.2 80 83.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.4e-26 122.1 79 82.3
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.4e-26 122.1 79 81.0
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 4.5e-26 121.7 139 50.4
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 5.9e-26 121.3 115 62.6
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.2e-25 119.4 79 79.7
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 8.5e-25 117.5 137 51.1
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.1e-24 117.1 77 81.8
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.5e-24 115.9 76 82.9
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.2e-24 114.4 119 57.1
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 2.1e-23 112.8 131 50.4
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 3.9e-22 108.6 68 82.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 8.8e-22 107.5 69 79.7
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 2.4e-19 99.4 70 72.9
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 6.9e-19 97.8 100 60.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.5e-18 96.7 58 82.8
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.0e-18 96.3 70 72.9
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.2e-15 87.0 68 67.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.0e-14 84.0 77 59.7
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.7e-14 81.3 54 77.8
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.1e-13 80.5 138 39.9
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 2.2e-12 76.3 72 59.7
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 2.2e-12 76.3 72 59.7
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.0e-09 67.4 58 60.3
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-07 60.1 108 42.6
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-07 60.1 51 60.8
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-07 60.1 49 63.3
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 1.6e-07 60.1 108 42.6
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 2.7e-07 59.3 51 60.8


User provided reference genes

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