Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 9.4e-45 183.3 105 100.0
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 4.2e-37 157.9 105 87.6
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 6.1e-36 154.1 103 85.4
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 3.5e-31 138.3 76 86.8
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 1.1e-26 123.2 106 72.6
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 1.3e-25 119.8 105 63.8
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 6.3e-25 117.5 103 60.2
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 3.5e-23 111.7 103 68.9
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 3.5e-23 111.7 103 70.9
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.7e-22 109.4 103 68.9
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 5.0e-22 107.8 75 68.0
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 1.2e-20 103.2 68 69.1
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 2.7e-20 102.1 92 68.5
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 3.6e-20 101.7 77 64.9
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 4.7e-20 101.3 99 53.5
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 6.1e-20 100.9 75 65.3
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 6.1e-20 100.9 78 61.5
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 6.1e-20 100.9 74 62.2
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 6.1e-20 100.9 70 68.6
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 6.1e-20 100.9 73 64.4
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 1.0e-19 100.1 102 68.6
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 2.3e-19 99.0 73 65.8
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 4.0e-19 98.2 99 50.5
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 4.0e-19 98.2 77 62.3
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 6.8e-19 97.4 74 64.9
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 8.8e-19 97.1 99 53.5
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 1.2e-18 96.7 102 54.9
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.5e-18 96.3 77 61.0
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 1.5e-18 96.3 73 63.0
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 1.5e-18 96.3 78 60.3
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 2.0e-18 95.9 99 50.5
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 5.7e-18 94.4 70 64.3
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 9.8e-18 93.6 70 64.3
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.7e-17 92.8 70 62.9
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 1.7e-17 92.8 71 62.0
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 1.7e-17 92.8 71 62.0
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 1.7e-17 92.8 73 60.3
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 2.2e-17 92.4 69 62.3
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 2.2e-17 92.4 105 49.5
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 2.8e-17 92.0 74 63.5
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 8.3e-17 90.5 77 63.6
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 8.3e-17 90.5 101 50.5
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 1.1e-16 90.1 101 50.5
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.1e-16 90.1 101 50.5
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.1e-16 90.1 101 50.5
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.1e-16 90.1 101 50.5
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.1e-16 90.1 101 50.5
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 1.8e-16 89.4 77 62.3
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 1.8e-16 89.4 100 48.0
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 2.4e-16 89.0 77 62.3
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 3.1e-16 88.6 76 57.9
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 3.1e-16 88.6 97 46.4
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 3.1e-16 88.6 76 56.6
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 4.1e-16 88.2 96 51.0
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.1e-16 88.2 101 50.5
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 5.4e-16 87.8 66 63.6
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 7.0e-16 87.4 100 49.0
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 7.0e-16 87.4 94 50.0
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 1.2e-15 86.7 94 53.2
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 1.2e-15 86.7 102 41.2
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 1.6e-15 86.3 77 61.0
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 1.6e-15 86.3 71 57.7
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 1.6e-15 86.3 94 52.1
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 2.0e-15 85.9 94 50.0
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 2.0e-15 85.9 70 62.9
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.0e-15 85.9 111 45.9
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 2.7e-15 85.5 94 50.0
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 2.7e-15 85.5 73 57.5
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 2.7e-15 85.5 75 57.3
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 3.5e-15 85.1 75 50.7
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 3.5e-15 85.1 94 50.0
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 7.7e-15 84.0 95 52.6
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 1.0e-14 83.6 79 53.2
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 1.0e-14 83.6 69 58.0
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 1.0e-14 83.6 94 48.9
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 1.0e-14 83.6 71 57.7
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 1.7e-14 82.8 96 44.8
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 1.7e-14 82.8 69 60.9
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 2.2e-14 82.4 100 44.0
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 3.8e-14 81.6 62 61.3
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 5.0e-14 81.3 66 57.6
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 6.5e-14 80.9 73 56.2
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 6.5e-14 80.9 69 58.0
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 6.5e-14 80.9 96 45.8
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 8.5e-14 80.5 62 61.3
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 1.1e-13 80.1 96 45.8
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 1.9e-13 79.3 88 50.0
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 1.9e-13 79.3 88 50.0
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 1.9e-13 79.3 88 50.0
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 1.9e-13 79.3 88 50.0
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 4.2e-13 78.2 69 55.1
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 5.5e-13 77.8 76 50.0
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 5.5e-13 77.8 76 50.0
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 7.2e-13 77.4 90 51.1
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 7.2e-13 77.4 90 51.1
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 9.5e-13 77.0 96 43.8
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 9.5e-13 77.0 70 52.9
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 1.2e-12 76.6 88 48.9
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 1.6e-12 76.3 89 43.8
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 2.1e-12 75.9 91 51.6
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 3.6e-12 75.1 89 43.8
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 1.4e-11 73.2 123 38.2
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 1.8e-11 72.8 93 46.2
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 2.3e-11 72.4 94 43.6
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 1.2e-10 70.1 77 49.4
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 2.0e-10 69.3 93 47.3
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 2.8e-09 65.5 88 40.9
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 1.1e-08 63.5 93 40.9
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 1.1e-08 63.5 93 40.9
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 1.6e-07 59.7 73 45.2
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 1.3e-06 56.6 62 51.6
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 8.6e-06 53.9 74 44.6


User provided reference genes

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