Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 8.3e-67 256.9 130 100.0
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 1.0e-56 223.4 131 86.3
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 6.6e-56 220.7 130 85.4
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 1.1e-55 219.9 131 84.7
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 2.7e-49 198.7 128 82.0
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 4.7e-46 188.0 131 74.8
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.4e-45 186.4 132 75.0
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 2.3e-45 185.7 132 75.0
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.2e-42 175.3 130 73.1
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.4e-34 149.8 128 64.8
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 2.4e-34 149.1 125 64.0
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 1.0e-32 143.7 127 62.2
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.7e-32 142.9 129 60.5
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 2.8e-30 135.6 130 56.9
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 3.1e-29 132.1 128 56.2
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 8.9e-29 130.6 129 58.1
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 9.9e-28 127.1 132 56.8
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 1.3e-27 126.7 130 60.8
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 2.9e-27 125.6 129 59.7
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 2.9e-27 125.6 129 59.7
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 3.2e-26 122.1 129 55.8
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 5.4e-26 121.3 128 52.3
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 3.9e-24 115.2 129 54.3
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 5.1e-24 114.8 137 54.0
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 1.1e-23 113.6 126 54.8
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 5.6e-23 111.3 124 54.0
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 3.6e-22 108.6 126 54.0
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 8.1e-22 107.5 125 49.6
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 5.2e-21 104.8 127 54.3
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 8.9e-21 104.0 124 54.8
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 8.9e-21 104.0 129 48.8
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.2e-20 103.6 126 50.0
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 1.5e-20 103.2 128 51.6
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 1.5e-20 103.2 128 51.6
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 1.5e-20 103.2 127 49.6
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.8e-20 101.3 127 50.4
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 5.8e-20 101.3 128 53.1
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 1.1e-18 97.1 129 48.1
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 3.2e-18 95.5 130 46.9
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 3.2e-18 95.5 127 48.0
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 4.2e-18 95.1 126 46.8
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 7.1e-18 94.4 125 48.0
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 7.1e-18 94.4 126 50.8
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 9.2e-18 94.0 125 45.6
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 1.2e-17 93.6 119 47.1
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.6e-17 93.2 129 51.2
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.6e-17 93.2 126 47.6
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.7e-16 89.7 129 42.6
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.0e-16 89.0 125 44.8
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 3.0e-16 89.0 131 45.0
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.6e-16 87.8 125 44.8
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.5e-15 86.7 131 46.6
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 1.5e-15 86.7 125 44.0
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.9e-15 86.3 124 44.4
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 4.3e-15 85.1 129 44.2
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 4.3e-15 85.1 128 44.5
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 5.6e-15 84.7 125 44.8
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 7.3e-15 84.3 117 42.7
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 7.3e-15 84.3 122 45.1
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.3e-14 83.6 130 40.8
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.3e-14 83.6 135 42.2
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.6e-14 83.2 126 43.7
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.1e-14 82.8 126 43.7
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 2.1e-14 82.8 123 43.9
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 2.8e-14 82.4 131 43.5
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 2.8e-14 82.4 125 46.4
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 4.8e-14 81.6 128 40.6
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 6.2e-14 81.3 126 41.3
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-13 80.5 128 41.4
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.1e-13 80.5 130 40.8
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.1e-13 80.5 130 40.8
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.1e-13 80.5 125 42.4
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.4e-13 80.1 102 51.0
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.4e-13 79.3 132 40.9
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.4e-13 79.3 129 40.3
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 2.4e-13 79.3 117 45.3
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 4.0e-13 78.6 125 42.4
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 4.0e-13 78.6 125 42.4
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 6.9e-13 77.8 134 40.3
Lj1g0018189 Lotus japonicus HOM05D004062 ORTHO05D004417 6.9e-13 77.8 125 40.8
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 9.0e-13 77.4 129 38.8
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 1.5e-12 76.6 138 40.6
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.0e-12 76.3 129 43.4
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 2.0e-12 76.3 118 44.1
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 2.0e-12 76.3 118 44.1
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 2.6e-12 75.9 123 43.9
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 3.4e-12 75.5 136 36.8
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 3.4e-12 75.5 126 39.7
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 4.4e-12 75.1 126 40.5
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.4e-12 75.1 127 37.8
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.8e-12 74.7 129 38.8
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 7.6e-12 74.3 128 39.8
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 7.6e-12 74.3 125 37.6
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 7.6e-12 74.3 120 42.5
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 7.6e-12 74.3 124 38.7
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.9e-12 73.9 124 40.3
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.9e-11 72.4 134 35.1
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 4.9e-11 71.6 122 40.2
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.4e-11 71.2 134 35.1
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.4e-11 70.9 134 35.1
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.1e-10 70.5 132 34.1
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 1.1e-10 70.5 128 39.8
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 1.4e-10 70.1 127 44.9
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 1.4e-10 70.1 125 40.0
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.4e-10 70.1 134 35.1
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-10 70.1 134 35.1
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-10 70.1 134 35.1
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 1.9e-10 69.7 128 38.3
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 3.2e-10 68.9 121 37.2
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.2e-10 68.6 129 37.2
Medtr7g082725 Medicago truncatula HOM05D004062 ORTHO05D004417 4.2e-10 68.6 87 49.4
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 5.4e-10 68.2 92 45.7
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 1.2e-09 67.0 128 35.2
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 2.1e-09 66.2 124 37.1
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 3.5e-09 65.5 132 37.9
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.0e-08 63.9 133 34.6
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 1.7e-08 63.2 132 34.8
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 2.3e-08 62.8 126 34.9
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.1e-08 61.6 132 37.1
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.1e-08 61.6 136 30.1
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 1.1e-07 60.5 131 35.1
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.5e-07 59.3 133 34.6
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 3.3e-07 58.9 133 34.6
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 3.3e-07 58.9 126 30.2
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 4.3e-07 58.5 134 37.3
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 7.3e-07 57.8 101 35.6
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 7.3e-07 57.8 101 35.6
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 7.3e-07 57.8 121 33.1
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 1.3e-06 57.0 117 35.0
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 1.3e-06 57.0 135 32.6
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 2.8e-06 55.8 137 32.1
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 2.8e-06 55.8 137 32.1
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 2.8e-06 55.8 124 34.7
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 2.8e-06 55.8 125 36.0
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.6e-06 55.5 125 30.4
CDE10G1145 Ceratophyllum demersum HOM05D000286 ORTHO05D002905 6.2e-06 54.7 110 31.8


User provided reference genes

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