Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 4.3e-110 401.4 207 100.0
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 5.8e-99 364.4 245 80.8
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 5.0e-82 308.1 221 78.3
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 2.2e-77 292.7 213 77.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.8e-76 289.7 213 74.6
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.2e-75 287.0 214 74.3
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.0e-71 273.9 207 75.8
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 3.3e-70 268.9 213 71.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 3.5e-67 258.8 211 65.4
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-65 253.8 211 65.9
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.2e-64 250.4 208 64.9
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 4.7e-64 248.4 209 65.1
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 6.1e-64 248.1 212 63.2
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.2e-59 233.8 210 65.7
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 4.5e-59 231.9 209 61.7
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.5e-57 226.1 156 76.3
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 5.0e-42 175.3 205 51.2
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.5e-41 173.7 212 53.8
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.0e-39 167.5 246 45.1
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.4e-38 162.2 211 49.3
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-37 160.2 211 49.3
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.9e-37 158.7 215 48.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 8.3e-37 157.9 213 48.4
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 3.5e-35 152.5 200 48.0
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 7.8e-35 151.4 219 44.7
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 7.8e-35 151.4 207 44.9
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 2.3e-34 149.8 201 48.3
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.9e-34 149.1 223 41.3
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.0e-34 148.7 216 44.0
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 6.6e-34 148.3 207 44.0
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.1e-33 147.5 192 51.0
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 1.1e-33 147.5 204 44.1
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.5e-33 147.1 214 47.2
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.5e-33 147.1 211 46.4
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.6e-32 143.7 216 41.7
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 1.6e-32 143.7 202 46.5
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 2.8e-32 142.9 214 44.4
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 3.6e-32 142.5 205 43.4
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 4.7e-32 142.1 202 45.5
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 8.0e-32 141.4 220 45.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 8.0e-32 141.4 203 44.3
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 8.0e-32 141.4 203 46.3
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.1e-31 141.0 208 43.8
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.4e-31 140.6 204 44.1
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.4e-31 140.6 209 44.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.8e-31 140.2 208 44.7
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.3e-31 139.8 206 44.2
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 3.1e-31 139.4 209 46.4
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.0e-31 139.0 215 42.8
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 4.0e-31 139.0 208 43.3
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 6.8e-31 138.3 200 45.5
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.2e-30 137.5 200 45.0
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.5e-30 137.1 208 43.3
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 3.4e-30 136.0 217 42.4
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.4e-30 136.0 202 46.0
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.8e-30 135.2 205 44.9
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.8e-30 135.2 202 43.6
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 9.8e-30 134.4 199 43.7
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.2e-29 133.3 196 43.4
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.9e-29 132.9 203 42.9
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 4.9e-29 132.1 201 41.3
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 4.1e-28 129.0 211 42.7
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 4.1e-28 129.0 206 41.3
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.4e-28 128.6 217 41.0
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.0e-28 128.3 208 41.8
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 7.0e-28 128.3 200 43.5
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 9.2e-28 127.9 209 41.1
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.2e-27 127.5 203 44.8
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.6e-27 125.6 211 41.2
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 6.0e-27 125.2 208 43.8
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 7.8e-27 124.8 208 43.3
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 7.8e-27 124.8 198 41.9
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 7.8e-27 124.8 211 41.2
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.3e-26 124.0 229 41.9
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 3.0e-26 122.9 211 41.2
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.9e-26 122.5 185 45.4
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.6e-26 121.7 214 41.1
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 8.6e-26 121.3 193 42.5
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.1e-25 120.9 202 39.6
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-25 120.9 208 40.9
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.5e-25 120.6 208 41.8
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.5e-25 120.6 205 42.0
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.5e-25 119.8 212 40.6
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.5e-25 119.8 200 41.5
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 3.3e-25 119.4 218 43.1
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 3.3e-25 119.4 206 39.3
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 9.5e-25 117.9 211 40.3
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-24 117.5 190 42.1
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.2e-24 117.5 209 41.6
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.6e-24 117.1 213 39.9
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 4.7e-24 115.5 208 39.4
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 8.1e-24 114.8 203 39.4
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 8.1e-24 114.8 205 42.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-23 114.0 211 39.3
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-23 114.0 211 39.3
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.4e-23 114.0 211 39.3
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.8e-23 113.6 205 42.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.8e-23 113.6 212 39.2
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.3e-23 113.2 208 38.9
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 2.3e-23 113.2 198 40.9
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.3e-23 113.2 190 42.1
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.1e-23 112.8 204 40.2
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 5.2e-23 112.1 211 39.3
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 5.2e-23 112.1 185 43.8
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.2e-22 110.9 195 42.1
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.5e-22 110.5 194 39.7
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.5e-22 110.5 211 37.4
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.6e-22 109.8 190 42.1
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 5.8e-22 108.6 193 40.9
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 7.5e-22 108.2 221 37.1
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 9.9e-22 107.8 190 41.1
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 9.9e-22 107.8 190 41.1
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 9.9e-22 107.8 190 41.1
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 9.9e-22 107.8 198 38.4
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 9.9e-22 107.8 200 40.0
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.7e-21 107.1 217 35.9
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.9e-21 106.3 193 38.9
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.7e-21 105.9 220 35.5
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.7e-21 105.9 208 39.9
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.7e-21 105.9 208 39.9
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 3.7e-21 105.9 216 38.4
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.3e-21 104.8 194 39.2
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 8.3e-21 104.8 192 42.2
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-20 104.4 208 39.4
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.4e-20 104.0 201 38.8
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.4e-20 103.2 201 38.3
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 4.1e-20 102.4 228 36.8
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 4.1e-20 102.4 217 35.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.2e-19 100.9 200 40.0
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.6e-19 100.5 208 37.5
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-19 100.1 185 40.0
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.1e-19 100.1 209 38.8
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.1e-19 100.1 209 38.8
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.7e-19 99.8 166 39.8
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 3.5e-19 99.4 204 37.3
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 3.5e-19 99.4 204 37.7
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 4.6e-19 99.0 185 37.8
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 6.0e-19 98.6 217 35.5
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.0e-18 97.8 185 38.4
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.3e-18 97.4 195 39.0
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 2.3e-18 96.7 190 37.4
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 2.3e-18 96.7 190 37.4
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.1e-17 94.4 186 37.6
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.9e-17 93.6 217 35.9
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 2.5e-17 93.2 196 38.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.5e-17 93.2 106 52.8
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 5.6e-17 92.0 167 40.1
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 5.6e-17 92.0 167 40.1
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.6e-17 92.0 209 36.8
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 5.6e-17 92.0 179 35.8
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 7.3e-17 91.7 168 38.1
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.8e-16 89.7 171 38.0
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 3.6e-16 89.4 216 33.3
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.4e-15 86.7 81 56.8
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.3e-13 80.9 207 30.4
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.2e-12 76.3 130 40.0
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 7.1e-12 75.1 75 58.7
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 7.1e-12 75.1 86 51.2
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.5e-11 72.8 205 30.7
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 3.5e-11 72.8 196 32.7
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.3e-10 70.1 206 29.1
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 2.5e-09 66.6 198 34.3
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 2.5e-09 66.6 121 39.7
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 4.3e-09 65.9 196 32.7
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 7.3e-09 65.1 188 34.0
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 3.6e-08 62.8 169 31.4
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.7e-08 62.4 191 29.8
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 4.7e-08 62.4 211 26.5
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 6.2e-08 62.0 202 31.7
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 2.4e-07 60.1 201 28.4
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 9.0e-07 58.2 195 28.7
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.5e-06 57.4 190 29.5


User provided reference genes

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