Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 2121.7 1106 100.0
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1855.5 1105 85.8
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1823.5 1108 84.7
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1761.9 1041 87.0
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1626.3 1108 75.9
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1608.2 1101 76.2
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1553.5 1110 73.8
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1521.5 1110 72.7
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1510.0 1086 71.7
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1463.0 1112 68.7
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1461.0 1111 68.7
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1209.1 1120 57.7
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1176.8 1089 56.9
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1170.6 1068 58.0
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1165.2 1113 54.7
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1165.2 1112 55.9
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1163.3 1112 54.9
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1149.0 1111 55.3
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1147.5 1122 56.3
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1145.2 1107 55.9
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1134.0 1101 54.3
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1132.1 1093 53.7
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1132.1 1093 53.6
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1128.6 1097 54.0
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1121.7 1108 54.8
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1121.3 1101 53.8
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1118.2 1097 53.3
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1107.8 1111 53.8
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1101.3 1100 52.7
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1091.3 1107 53.1
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1075.1 1110 52.2
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 3.0e-311 1072.0 1093 54.2
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 4.8e-309 1064.7 1109 51.8
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 1.6e-304 1049.7 1100 52.0
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 1.2e-302 1043.5 1106 52.0
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 3.7e-301 1038.5 1099 50.8
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 4.0e-295 1018.5 1104 51.4
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 3.4e-294 1015.4 1117 50.2
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 1.1e-289 1000.3 1109 49.4
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 2.5e-289 999.2 1102 49.6
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 1.4e-287 993.4 1113 49.1
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 7.0e-284 981.1 1113 49.9
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 1.7e-282 976.5 1107 48.6
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 2.3e-282 976.1 1092 47.2
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 3.0e-282 975.7 1113 48.2
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 3.9e-282 975.3 1103 47.1
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 2.5e-281 972.6 1108 48.8
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 2.1e-280 969.5 1132 47.9
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 8.1e-280 967.6 1130 47.9
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 2.0e-278 963.0 1105 48.5
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 1.1e-276 957.2 1108 47.6
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 3.9e-274 948.7 1096 47.3
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 2.8e-272 942.6 1132 47.1
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 5.2e-271 938.3 1138 47.5
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 3.4e-270 935.6 927 52.8
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 1.4e-268 930.2 1108 46.0
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 7.1e-268 927.9 1125 45.0
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 1.0e-266 924.1 1027 49.9
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 6.6e-266 921.4 870 54.3
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 4.0e-263 912.1 947 53.3
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 1.2e-259 900.6 1014 48.8
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 6.0e-259 898.3 1100 46.2
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 2.8e-256 889.4 1111 46.7
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 2.8e-256 889.4 1119 45.1
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 1.5e-254 883.6 978 49.8
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 9.3e-252 874.4 761 59.1
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 2.5e-249 866.3 979 48.0
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 4.3e-249 865.5 821 55.7
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 5.8e-246 855.1 1112 44.2
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 1.7e-245 853.6 1111 44.4
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 3.4e-238 829.3 1103 44.5
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.2e-235 820.8 952 48.4
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 8.7e-234 814.7 922 48.0
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 1.1e-231 807.7 1126 42.0
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 4.1e-231 805.8 1163 41.1
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 3.6e-227 792.7 1107 42.4
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 8.8e-226 788.1 991 45.0
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 3.6e-219 766.1 1113 41.3
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 3.4e-214 749.6 1102 40.7
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.3e-213 747.7 1119 39.5
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 6.8e-194 682.2 771 47.6
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 2.4e-191 673.7 749 50.3
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 1.9e-180 637.5 629 52.6
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.9e-176 623.6 800 45.1
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.2e-159 567.0 932 39.6
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.1e-156 558.5 729 44.2
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 7.8e-150 535.8 1095 34.2
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.4e-138 497.7 689 42.2
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 1.7e-136 491.5 1154 29.8
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 1.5e-129 468.4 1336 26.7
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.4e-106 391.3 494 45.1
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.6e-97 361.3 447 46.8
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 7.7e-97 359.8 340 54.4
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.1e-92 345.9 381 47.5
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 2.8e-91 341.3 357 53.2
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.2e-86 325.9 627 36.5
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 9.7e-84 316.2 325 52.6
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.7e-73 281.6 334 46.1
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.3e-72 279.3 1245 25.2
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 6.6e-64 250.4 296 45.6
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 4.9e-59 234.2 288 45.8
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 4.9e-59 234.2 301 43.2
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 4.3e-55 221.1 353 36.5
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 4.7e-54 217.6 288 42.4
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 4.1e-50 204.5 257 45.1
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 3.0e-48 198.4 232 50.9
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.7e-40 172.6 209 45.9
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 1.9e-39 169.1 184 48.9
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.9e-39 169.1 400 32.5
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 1.6e-38 166.0 152 55.9
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.6e-38 166.0 230 40.0
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 2.8e-38 165.2 312 36.2
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 3.5e-33 148.3 161 48.4
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.7e-32 146.0 167 46.1
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 3.4e-28 131.7 138 55.8
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 9.9e-28 130.2 496 25.2
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 1.1e-23 116.7 373 25.7
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 1.3e-22 113.2 97 55.7
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.3e-22 113.2 97 55.7
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.3e-22 113.2 97 55.7
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 2.2e-19 102.4 124 46.0
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.0e-16 92.0 141 39.7
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.5e-15 89.7 161 39.1
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 2.6e-12 79.0 70 60.0
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 7.1e-10 70.9 86 43.0
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 2.7e-09 68.9 137 33.6
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-08 66.6 232 23.7
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.3e-08 66.6 84 44.0
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.9e-07 62.8 47 55.3
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.5e-07 62.4 94 42.6
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 7.4e-07 60.8 443 20.5


User provided reference genes

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