Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 7.2e-67 257.3 149 100.0
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 4.3e-43 178.3 150 71.3
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 4.9e-39 164.9 128 73.4
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 4.9e-39 164.9 142 74.6
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 7.3e-35 151.0 130 69.2
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 4.7e-34 148.3 130 68.5
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 8.1e-34 147.5 128 71.1
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 4.0e-33 145.2 124 69.4
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 3.2e-30 135.6 123 65.9
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 4.1e-30 135.2 115 68.7
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 9.2e-30 134.0 138 58.7
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 1.2e-29 133.7 138 61.6
Ca_08521_v3 Cicer arietinum L. HOM05D007306 ORTHO05D009112 6.0e-29 131.3 123 67.5
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 1.3e-28 130.2 123 64.2
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 7.3e-27 124.4 139 54.7
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 6.2e-26 121.3 138 54.3
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 6.2e-26 121.3 139 56.1
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 1.4e-25 120.2 146 55.5
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 1.8e-25 119.8 149 55.0
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 1.8e-25 119.8 149 55.0
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 1.8e-25 119.8 145 51.7
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 3.1e-25 119.0 136 55.1
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 4.0e-25 118.6 135 54.8
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 5.2e-25 118.2 139 53.2
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 6.9e-25 117.9 139 57.6
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 1.2e-24 117.1 149 54.4
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 1.5e-24 116.7 139 53.2
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 1.5e-24 116.7 128 57.0
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 4.4e-24 115.2 134 56.7
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 5.8e-24 114.8 152 53.3
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 5.8e-24 114.8 140 53.6
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 7.6e-24 114.4 136 52.9
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 7.6e-24 114.4 131 55.0
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 2.2e-23 112.8 141 53.9
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 3.8e-23 112.1 141 55.3
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 4.9e-23 111.7 134 53.7
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 4.9e-23 111.7 136 51.5
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 6.4e-23 111.3 146 52.1
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 8.4e-23 110.9 139 51.8
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.1e-22 110.5 161 52.2
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 1.1e-22 110.5 136 54.4
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 1.4e-22 110.2 136 53.7
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 1.9e-22 109.8 143 49.0
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.9e-22 109.8 161 50.9
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 3.2e-22 109.0 124 55.6
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 4.2e-22 108.6 142 50.7
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 9.3e-22 107.5 127 55.1
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 1.2e-21 107.1 146 50.0
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.1e-21 106.3 161 51.6
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 2.1e-21 106.3 124 54.0
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 4.6e-21 105.1 136 53.7
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 6.0e-21 104.8 124 53.2
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 7.8e-21 104.4 145 53.8
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 1.0e-20 104.0 132 53.8
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 1.7e-20 103.2 131 53.4
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 2.3e-20 102.8 144 50.0
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 3.0e-20 102.4 125 54.4
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 6.6e-20 101.3 127 50.4
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 6.6e-20 101.3 127 50.4
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 1.5e-19 100.1 131 51.9
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 2.5e-19 99.4 130 50.0
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 3.3e-19 99.0 136 47.1
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 3.3e-19 99.0 131 50.4
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 4.3e-19 98.6 130 47.7
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 4.3e-19 98.6 131 51.1
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 5.6e-19 98.2 127 48.8
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 7.3e-19 97.8 128 50.8
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 9.6e-19 97.4 131 51.9
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 9.6e-19 97.4 134 52.2
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 2.1e-18 96.3 132 45.5
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 4.8e-18 95.1 158 46.8
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 6.2e-18 94.7 158 46.8
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 8.1e-18 94.4 126 45.2
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 1.1e-17 94.0 140 42.9
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 2.4e-17 92.8 129 45.0
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 5.3e-17 91.7 134 50.7
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 5.3e-17 91.7 147 43.5
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 6.9e-17 91.3 132 50.8
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 6.9e-17 91.3 129 44.2
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 6.9e-17 91.3 129 44.2
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 6.9e-17 91.3 129 44.2
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 9.0e-17 90.9 130 44.6
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 9.0e-17 90.9 130 44.6
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 9.0e-17 90.9 129 47.3
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 1.5e-16 90.1 126 50.8
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 1.5e-16 90.1 133 49.6
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 2.6e-16 89.4 129 44.2
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 4.9e-15 85.1 161 39.8
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 8.4e-15 84.3 154 40.3
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 4.2e-14 82.0 130 41.5
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 4.2e-14 82.0 135 43.7
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 4.2e-14 82.0 102 51.0
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 5.4e-14 81.6 133 41.4
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 6.0e-13 78.2 129 43.4
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 6.0e-13 78.2 157 40.1
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 6.0e-13 78.2 128 42.2
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 3.0e-12 75.9 134 41.8
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 4.3e-11 72.0 166 39.2
ATR0807G086 Amborella trichopoda HOM05D007306 ORTHO05D009112 2.8e-10 69.3 127 38.6
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 3.7e-10 68.9 91 42.9
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 6.2e-10 68.2 146 40.4
Haze_19991 Corylus avellana HOM05D000267 ORTHO05D000298 7.6e-08 61.2 35 82.9
Ah.04g152480 Amaranthus hybridus HOM05D007306 ORTHO05D009112 2.9e-07 59.3 162 32.1
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 2.9e-07 59.3 46 60.9
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 3.8e-07 58.9 115 35.7
unitig_22.g6026 Utricularia gibba HOM05D007306 ORTHO05D009112 6.4e-07 58.2 123 39.8


User provided reference genes

Program Settings