Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g066680 Pisum sativum HOM05D002370 ORTHO05D032982 6.4e-224 780.4 385 100.0
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 1.9e-47 194.1 105 94.3
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 9.7e-47 191.8 105 93.3
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 9.7e-47 191.8 105 93.3
TPR.G8287 Trifolium pratense HOM05D002370 ORTHO05D003878 4.8e-46 189.5 105 92.4
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 2.4e-45 187.2 105 91.4
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 5.3e-45 186.0 105 90.5
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 5.3e-45 186.0 105 90.5
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 6.9e-45 185.7 105 90.5
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 6.9e-45 185.7 105 90.5
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 2.6e-44 183.7 105 88.6
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 2.6e-44 183.7 105 88.6
arahy.Tifrunner.gnm1.ann1.UC42H8 Arachis hypogaea HOM05D002370 ORTHO05D003878 2.6e-44 183.7 105 88.6
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 2.6e-44 183.7 105 89.5
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 1.3e-43 181.4 105 87.6
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 1.3e-43 181.4 105 87.6
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 1.3e-43 181.4 105 87.6
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 3.8e-43 179.9 105 88.6
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 5.0e-43 179.5 105 86.7
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 5.0e-43 179.5 105 86.7
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 6.5e-43 179.1 105 86.7
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 6.5e-43 179.1 105 87.6
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 1.1e-42 178.3 105 87.6
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 1.9e-42 177.6 112 81.2
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.5e-42 177.2 105 86.7
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 2.5e-42 177.2 105 86.7
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 3.2e-42 176.8 105 86.7
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 4.2e-42 176.4 105 84.8
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 4.2e-42 176.4 105 84.8
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 5.5e-42 176.0 105 85.7
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 5.5e-42 176.0 105 85.7
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 5.5e-42 176.0 105 84.8
Hma1.2p1_0661F.1_g197990 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 5.5e-42 176.0 105 85.7
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 5.5e-42 176.0 105 84.8
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 5.5e-42 176.0 105 84.8
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 9.3e-42 175.3 105 83.8
SalBow6G7047 Salvia bowleyana HOM05D002370 ORTHO05D003878 9.3e-42 175.3 108 82.4
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 9.3e-42 175.3 105 86.7
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 1.2e-41 174.9 105 84.8
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.2e-41 174.9 105 85.7
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 1.6e-41 174.5 105 84.8
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.6e-41 174.5 105 85.7
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.6e-41 174.5 105 85.7
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 1.6e-41 174.5 105 85.7
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 2.1e-41 174.1 105 83.8
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 2.7e-41 173.7 105 84.8
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 3.6e-41 173.3 105 83.8
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.6e-41 173.3 105 83.8
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.6e-41 173.3 105 83.8
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 7.9e-41 172.2 105 83.8
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.0e-40 171.8 105 84.8
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.0e-40 171.8 105 84.8
Cpa.g.sc520.2 Carica papaya HOM05D002370 ORTHO05D003878 1.0e-40 171.8 105 82.9
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 1.0e-40 171.8 105 83.8
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 1.0e-40 171.8 105 82.9
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.4e-40 171.4 105 83.8
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 1.4e-40 171.4 105 83.8
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.4e-40 171.4 105 83.8
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.8e-40 171.0 105 82.9
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.8e-40 171.0 105 83.8
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 3.0e-40 170.2 104 83.7
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 3.0e-40 170.2 105 82.9
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 3.9e-40 169.9 105 81.9
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 3.9e-40 169.9 105 83.8
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 3.9e-40 169.9 105 83.8
CDE06G2553 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 5.1e-40 169.5 105 82.9
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 6.7e-40 169.1 105 82.9
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 6.7e-40 169.1 105 81.9
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 6.7e-40 169.1 105 83.8
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 8.8e-40 168.7 105 81.9
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 1.1e-39 168.3 105 82.9
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 1.1e-39 168.3 105 82.9
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 2.5e-39 167.2 105 81.9
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 3.3e-39 166.8 105 81.0
Actinidia00351 Actinidia chinensis HOM05D002370 ORTHO05D003878 5.7e-39 166.0 105 82.9
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 5.7e-39 166.0 105 83.8
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 7.4e-39 165.6 105 79.0
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 1.3e-38 164.9 105 79.0
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 1.7e-38 164.5 105 81.0
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.7e-38 164.5 105 81.9
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.7e-38 164.5 105 81.9
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 1.7e-38 164.5 105 82.9
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 2.8e-38 163.7 109 79.8
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 2.8e-38 163.7 105 81.0
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 6.3e-38 162.5 105 78.1
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 6.3e-38 162.5 105 80.0
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 8.2e-38 162.2 105 81.0
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 8.2e-38 162.2 105 81.0
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 8.2e-38 162.2 109 78.9
vmacro01938 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 1.1e-37 161.8 105 80.0
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 1.4e-37 161.4 122 72.1
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 1.8e-37 161.0 105 80.0
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 1.8e-37 161.0 105 80.0
Haze_10317 Corylus avellana HOM05D002370 ORTHO05D003878 3.1e-37 160.2 132 67.4
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 3.1e-37 160.2 105 79.0
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 3.1e-37 160.2 105 79.0
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 5.3e-37 159.5 105 79.0
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 9.1e-37 158.7 105 78.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.2e-36 158.3 105 78.1
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 2.0e-36 157.5 105 79.0
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 2.0e-36 157.5 105 78.1
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 2.0e-36 157.5 105 78.1
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 2.0e-36 157.5 105 78.1
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 2.0e-36 157.5 105 78.1
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 2.0e-36 157.5 105 78.1
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 2.0e-36 157.5 105 78.1
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 2.6e-36 157.1 104 78.8
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 3.4e-36 156.8 105 77.1
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 4.5e-36 156.4 105 78.1
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 4.5e-36 156.4 105 77.1
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 7.7e-36 155.6 105 77.1
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 7.7e-36 155.6 105 77.1
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 7.7e-36 155.6 105 77.1
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 7.7e-36 155.6 105 77.1
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 7.7e-36 155.6 105 77.1
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 7.7e-36 155.6 105 77.1
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 1.0e-35 155.2 105 78.1
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 3.8e-35 153.3 105 77.1
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 5.5e-34 149.4 104 75.0
SEGI_21899 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.6e-33 147.9 105 75.2
Eucgr.C04378 Eucalyptus grandis HOM05D002370 ORTHO05D003878 5.1e-32 142.9 105 72.4
SEGI_07133 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 5.1e-32 142.9 105 73.3
Eucgr.I02504 Eucalyptus grandis HOM05D002370 ORTHO05D003878 2.0e-28 131.0 105 69.5
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 3.4e-28 130.2 105 68.6
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 5.5e-26 122.9 105 64.8
Psat0ss777g0080 Pisum sativum HOM05D002370 ORTHO05D032982 1.6e-25 121.3 67 91.0
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 1.1e-23 115.2 104 60.6
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 2.0e-23 114.4 67 86.6
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 2.6e-23 114.0 105 61.0
Psat4g136640 Pisum sativum HOM05D000188 ORTHO05D003976 2.6e-23 114.0 61 91.8
Psat4g136680 Pisum sativum HOM05D000188 ORTHO05D003976 9.7e-23 112.1 61 90.2
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 4.1e-21 106.7 106 55.7
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 5.9e-20 102.8 103 54.4
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 2.9e-19 100.5 107 54.2
MELO3C031102.2 Cucumis melo HOM05D002370 ORTHO05D015007 1.1e-18 98.6 61 80.3
PSO478G0778 Papaver somniferum HOM05D000001 ORTHO05D013996 1.2e-17 95.1 84 56.0
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 1.8e-16 91.3 47 93.6
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 2.0e-12 77.8 89 49.4
EL10Ac5g12235 Beta vulgaris HOM05D002370 ORTHO05D003878 1.3e-11 75.1 44 84.1
FAN05G1179 Fragaria x ananassa HOM05D002370 ORTHO05D015007 3.8e-11 73.6 42 88.1
FAN25G3390 Fragaria x ananassa HOM05D002370 ORTHO05D015007 3.8e-11 73.6 42 88.1
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 3.2e-10 70.5 47 72.3
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 7.2e-10 69.3 100 52.0
Hund06505 Selenicereus undatus HOM05D002370 ORTHO05D003878 9.4e-10 68.9 42 83.3
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 4.4e-07 60.1 87 41.4
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 1.3e-06 58.5 60 55.0
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.3e-06 58.5 92 45.7
Oeu039350.3 Olea europaea HOM05D000188 ORTHO05D003976 8.3e-06 55.8 60 55.0


User provided reference genes

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