Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 2.1e-109 399.1 204 100.0
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 1.2e-77 293.5 181 83.4
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 4.7e-77 291.6 178 84.8
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 2.9e-74 282.3 182 79.1
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 5.1e-63 245.0 181 70.2
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 2.8e-61 239.2 180 70.0
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 1.8e-60 236.5 184 67.9
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 6.9e-60 234.6 181 68.0
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 2.2e-58 229.6 163 73.0
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 2.4e-57 226.1 174 67.8
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 7.1e-57 224.6 187 63.1
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 7.1e-57 224.6 143 78.3
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 2.3e-55 219.5 180 63.9
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 3.9e-55 218.8 140 77.9
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 4.3e-54 215.3 187 63.1
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 4.3e-54 215.3 138 76.1
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 3.7e-53 212.2 139 74.8
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 3.7e-53 212.2 136 76.5
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 3.7e-53 212.2 141 73.8
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 1.8e-52 209.9 140 75.7
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 3.1e-52 209.1 138 75.4
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 4.0e-52 208.8 133 77.4
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 9.0e-52 207.6 187 61.0
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 9.0e-52 207.6 169 65.1
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 9.0e-52 207.6 180 61.1
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.2e-51 207.2 167 64.1
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.2e-51 207.2 132 75.8
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 1.2e-51 207.2 139 72.7
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.0e-51 206.5 140 76.4
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.6e-51 206.1 140 76.4
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.6e-51 206.1 140 76.4
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.6e-51 206.1 140 76.4
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.6e-51 206.1 140 76.4
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 3.4e-51 205.7 139 76.3
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 7.6e-51 204.5 166 63.3
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 7.6e-51 204.5 126 78.6
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 7.6e-51 204.5 133 76.7
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 1.0e-50 204.1 134 73.9
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.3e-50 203.8 175 63.4
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 2.9e-50 202.6 133 75.9
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 4.9e-50 201.8 133 73.7
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 1.1e-49 200.7 149 67.8
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 1.4e-49 200.3 140 70.0
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 1.9e-49 199.9 141 74.5
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 4.2e-49 198.7 135 74.1
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 4.2e-49 198.7 148 67.6
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 7.1e-49 198.0 133 72.9
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 7.1e-49 198.0 159 67.3
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 9.3e-49 197.6 187 57.8
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.2e-48 197.2 183 59.0
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 1.6e-48 196.8 143 72.7
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 1.8e-47 193.4 149 67.8
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 1.8e-47 193.4 129 72.9
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 1.8e-47 193.4 145 66.9
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 3.9e-47 192.2 180 59.4
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.1e-46 190.7 174 59.2
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 2.5e-46 189.5 144 66.7
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 4.3e-46 188.7 143 66.4
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 4.3e-46 188.7 185 57.8
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 5.7e-46 188.3 167 61.1
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 5.7e-46 188.3 167 61.1
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 5.7e-46 188.3 183 59.0
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 7.4e-46 188.0 133 70.7
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 9.6e-46 187.6 135 69.6
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 9.6e-46 187.6 134 67.9
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 1.3e-45 187.2 135 71.9
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 1.3e-45 187.2 135 71.9
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.3e-45 187.2 185 56.8
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.3e-45 187.2 137 70.1
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 1.6e-45 186.8 133 69.2
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 1.6e-45 186.8 135 71.9
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 1.6e-45 186.8 135 71.9
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 1.6e-45 186.8 121 76.9
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 3.7e-45 185.7 135 71.1
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 4.8e-45 185.3 135 70.4
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 4.8e-45 185.3 135 70.4
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 6.3e-45 184.9 135 70.4
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 6.3e-45 184.9 136 68.4
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 1.1e-44 184.1 136 70.6
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 1.1e-44 184.1 136 66.9
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 1.8e-44 183.3 135 70.4
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 1.8e-44 183.3 151 63.6
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 3.1e-44 182.6 131 74.8
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 4.1e-44 182.2 135 68.9
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 4.1e-44 182.2 137 67.2
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 4.1e-44 182.2 116 75.9
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 5.3e-44 181.8 137 67.2
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 1.5e-43 180.3 152 63.8
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 2.0e-43 179.9 187 52.9
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 2.0e-43 179.9 188 54.3
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 2.0e-43 179.9 177 55.9
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 2.6e-43 179.5 175 57.1
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 5.9e-43 178.3 122 68.9
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 5.9e-43 178.3 125 70.4
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 7.6e-43 177.9 110 80.9
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 2.2e-42 176.4 140 66.4
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 1.4e-41 173.7 166 58.4
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 1.4e-41 173.7 118 75.4
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 5.5e-41 171.8 122 70.5
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 5.5e-41 171.8 122 70.5
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 2.7e-40 169.5 184 54.3
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 5.1e-39 165.2 117 71.8
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 8.7e-39 164.5 114 71.9
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 8.2e-37 157.9 116 68.1
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 1.4e-36 157.1 186 46.8
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 1.8e-36 156.8 144 57.6
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.2e-35 154.1 114 70.2
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 2.0e-35 153.3 88 83.0
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 2.6e-35 152.9 153 53.6
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 5.0e-34 148.7 110 68.2
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 8.5e-34 147.9 120 64.2
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 7.2e-33 144.8 127 56.7
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 6.1e-32 141.7 100 72.0
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 1.0e-31 141.0 97 72.2
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 1.4e-31 140.6 112 60.7
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 3.9e-31 139.0 110 61.8
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 1.5e-27 127.1 176 41.5
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 1.4e-25 120.6 191 38.7
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 1.5e-17 94.0 121 52.9
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 2.5e-17 93.2 120 42.5
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 8.0e-16 88.2 69 63.8
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.2e-14 84.3 101 47.5
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.0e-10 68.9 61 55.7
QL11p010710 Quercus lobata HOM05D006312 ORTHO05D007843 8.8e-07 58.2 82 43.9
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 3.4e-06 56.2 81 39.5


User provided reference genes

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