Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 3.9e-30 134.8 107 100.0
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 3.4e-18 95.1 60 81.7
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 6.2e-12 74.3 59 67.8
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 1.8e-11 72.8 65 64.6
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 1.8e-11 72.8 61 63.9
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 3.1e-11 72.0 59 64.4
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 4.0e-11 71.6 62 64.5
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 6.9e-11 70.9 62 61.3
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 2.0e-10 69.3 58 63.8
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 2.6e-10 68.9 63 60.3
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 3.4e-10 68.6 62 61.3
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 4.5e-10 68.2 63 63.5
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 4.5e-10 68.2 63 55.6
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 5.8e-10 67.8 64 62.5
Carub.0007s1161 Capsella rubella HOM05D008344 ORTHO05D006413 1.3e-09 66.6 61 54.1
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 1.3e-09 66.6 59 67.8
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 1.3e-09 66.6 63 57.1
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 1.3e-09 66.6 64 65.6
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 1.7e-09 66.2 57 59.6
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 2.9e-09 65.5 61 59.0
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 2.9e-09 65.5 57 63.2
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 3.8e-09 65.1 54 63.0
Phvul.007G156700 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 3.8e-09 65.1 59 67.8
BcaNung00447 Brassica carinata HOM05D008344 ORTHO05D006413 4.9e-09 64.7 61 55.7
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 4.9e-09 64.7 61 59.0
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 4.9e-09 64.7 56 58.9
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 6.5e-09 64.3 60 63.3
Sopen09g025140 Solanum pennellii HOM05D014142 ORTHO05D006413 8.4e-09 63.9 59 55.9
Medtr1g069085 Medicago truncatula HOM05D007427 ORTHO05D006413 1.1e-08 63.5 60 63.3
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 1.1e-08 63.5 68 57.4
A03p58660 Brassica napus HOM05D008344 ORTHO05D006413 1.4e-08 63.2 61 55.7
BraA03t14927Z Brassica rapa HOM05D008344 ORTHO05D006413 1.4e-08 63.2 61 55.7
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 2.5e-08 62.4 56 60.7
AL7G23430 Arabidopsis lyrata HOM05D008344 ORTHO05D006413 2.5e-08 62.4 61 54.1
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 2.5e-08 62.4 61 63.9
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 2.5e-08 62.4 54 57.4
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.5e-08 62.4 60 63.3
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.5e-08 62.4 60 63.3
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 2.5e-08 62.4 60 63.3
Sopen09g025130 Solanum pennellii HOM05D014142 ORTHO05D006413 2.5e-08 62.4 56 57.1
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 3.2e-08 62.0 64 54.7
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 3.2e-08 62.0 69 55.1
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 4.2e-08 61.6 76 46.1
A01p08960 Brassica napus HOM05D008344 ORTHO05D011034 5.5e-08 61.2 62 54.8
C01p10500 Brassica napus HOM05D008344 ORTHO05D011034 5.5e-08 61.2 62 54.8
BraA01t00842Z Brassica rapa HOM05D008344 ORTHO05D011034 5.5e-08 61.2 62 54.8
Nitab4.5_0000813g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 5.5e-08 61.2 61 54.1
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 7.1e-08 60.8 63 57.1
Thhalv10026613m.g Eutrema salsugineum HOM05D008344 ORTHO05D006413 9.3e-08 60.5 52 57.7
Glyma.13G130600 Glycine max HOM05D007427 ORTHO05D006413 9.3e-08 60.5 52 67.3
Nitab4.5_0001657g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 9.3e-08 60.5 61 54.1
BcaB03g12592 Brassica carinata HOM05D008344 ORTHO05D006413 1.2e-07 60.1 51 58.8
DCAR_012627 Daucus carota HOM05D007427 ORTHO05D006413 1.2e-07 60.1 63 50.8
Duzib138G1712 Durio zibethinus HOM05D007427 ORTHO05D006413 1.2e-07 60.1 41 80.5
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 1.2e-07 60.1 59 61.0
BolC1t01011H Brassica oleracea HOM05D008344 ORTHO05D006413 1.6e-07 59.7 62 53.2
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 2.7e-07 58.9 74 44.6
Cc01_g17390 Coffea canephora HOM05D007427 ORTHO05D006413 2.7e-07 58.9 55 56.4
Sp7g26970 Schrenkiella parvula HOM05D008344 ORTHO05D006413 2.7e-07 58.9 61 55.7
AT4G29030 Arabidopsis thaliana HOM05D008344 ORTHO05D006413 3.5e-07 58.5 59 54.2
BcaC09g51682 Brassica carinata HOM05D008344 ORTHO05D006413 4.6e-07 58.2 60 55.0
FvH4_2g19680 Fragaria vesca HOM05D007427 ORTHO05D006413 6.0e-07 57.8 64 48.4
FAN15G2923 Fragaria x ananassa HOM05D007427 ORTHO05D006413 7.9e-07 57.4 64 48.4
FAN27G1788 Fragaria x ananassa HOM05D007427 ORTHO05D006413 7.9e-07 57.4 64 48.4
Nitab4.5_0001740g0060 Nicotiana tabacum HOM05D007427 ORTHO05D006413 7.9e-07 57.4 56 55.4
PGSC0003DMG400015809 Solanum tuberosum HOM05D014142 ORTHO05D006413 1.0e-06 57.0 54 53.7
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 1.3e-06 56.6 58 53.4
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 1.3e-06 56.6 55 50.9
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 1.3e-06 56.6 62 51.6
Gohir.D08G211500 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.3e-06 56.6 77 50.6
Gorai.004G224800 Gossypium raimondii HOM05D007427 ORTHO05D006413 1.3e-06 56.6 77 50.6
SGA_v2.0_scaffold1G00704 Striga asiatica HOM05D007427 ORTHO05D006413 1.3e-06 56.6 64 50.0
ECA236G2240 Erigeron canadensis HOM05D007427 ORTHO05D006413 1.8e-06 56.2 64 57.8
FAN24G2151 Fragaria x ananassa HOM05D007427 ORTHO05D006413 1.8e-06 56.2 63 47.6
Gohir.A08G193800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.8e-06 56.2 77 50.6
Sopen09g025110 Solanum pennellii HOM05D014142 ORTHO05D006413 1.8e-06 56.2 54 53.7
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 1.8e-06 56.2 69 53.6
Migut.N02250 Erythranthe guttata HOM05D007427 ORTHO05D006413 2.3e-06 55.8 62 51.6
Psat6g064560 Pisum sativum HOM05D007427 ORTHO05D006413 2.3e-06 55.8 64 62.5
CAN.G5.23 Capsicum annuum HOM05D014142 ORTHO05D006413 3.0e-06 55.5 60 48.3
ECA247G2869 Erigeron canadensis HOM05D047643 ORTHO05D006413 3.0e-06 55.5 79 48.1
BcaC07g38365 Brassica carinata HOM05D008344 ORTHO05D006413 3.9e-06 55.1 52 53.8
C08p11130 Brassica napus HOM05D008344 ORTHO05D006413 3.9e-06 55.1 52 53.8
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 3.9e-06 55.1 65 55.4
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 3.9e-06 55.1 62 50.0
unitig_22.g6317 Utricularia gibba HOM05D007427 ORTHO05D006413 3.9e-06 55.1 62 45.2
MSTRG.21440 Avicennia marina HOM05D007427 ORTHO05D006413 5.1e-06 54.7 63 47.6
C07p56610 Brassica napus HOM05D008344 ORTHO05D006413 5.1e-06 54.7 57 52.6
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 5.1e-06 54.7 63 44.4
BolC8t48789H Brassica oleracea HOM05D008344 ORTHO05D006413 6.7e-06 54.3 52 53.8
Lsat_1_v5_gn_9_11040 Lactuca sativa HOM05D047643 ORTHO05D006413 6.7e-06 54.3 69 52.2
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 6.7e-06 54.3 56 57.1
PGSC0003DMG400015810 Solanum tuberosum HOM05D014142 ORTHO05D006413 6.7e-06 54.3 57 50.9
SGA_v2.0_scaffold8G04664 Striga asiatica HOM05D007427 ORTHO05D006413 6.7e-06 54.3 57 49.1
BolC8t48782H Brassica oleracea HOM05D008344 ORTHO05D006413 8.7e-06 53.9 52 51.9


User provided reference genes

Program Settings