Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.0e-128 463.4 226 100.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.1e-45 186.0 211 51.7
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 3.3e-39 166.0 215 46.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 3.6e-33 146.0 203 40.9
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.2e-28 131.0 96 64.6
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.3e-27 127.5 189 37.6
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 3.8e-27 125.9 185 36.2
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.1e-26 124.4 192 36.5
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.1e-26 124.4 203 40.4
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.1e-26 124.4 200 37.5
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.1e-26 124.4 208 36.1
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.1e-26 124.4 200 37.0
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.9e-26 123.6 197 37.6
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.5e-26 123.2 188 35.1
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.5e-26 123.2 188 35.1
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.5e-26 123.2 207 36.2
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 4.2e-26 122.5 199 38.7
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 5.5e-26 122.1 191 40.8
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 5.5e-26 122.1 194 37.6
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 7.2e-26 121.7 199 36.7
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 9.4e-26 121.3 210 36.7
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 9.4e-26 121.3 212 35.8
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.2e-25 120.9 200 36.0
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.2e-25 120.9 197 36.5
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-25 120.9 203 37.4
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.2e-25 120.9 203 37.4
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.2e-25 120.9 207 38.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.1e-25 120.2 210 38.6
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.1e-25 120.2 210 38.6
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.1e-25 120.2 223 39.5
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.1e-25 120.2 212 36.8
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.7e-25 119.8 203 35.0
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.6e-25 119.4 197 38.6
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 4.7e-25 119.0 203 39.4
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 6.1e-25 118.6 219 34.7
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 8.0e-25 118.2 218 34.4
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 8.0e-25 118.2 205 39.0
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.0e-24 117.9 203 36.9
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.0e-24 117.9 213 35.7
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.4e-24 117.5 196 35.7
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.8e-24 117.1 229 36.2
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.8e-24 117.1 193 37.8
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.8e-24 117.1 205 35.1
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.3e-24 116.7 201 38.3
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.3e-24 116.7 206 35.0
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 3.0e-24 116.3 215 37.7
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 4.0e-24 115.9 207 35.7
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 6.7e-24 115.2 202 38.1
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 6.7e-24 115.2 195 37.9
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 6.7e-24 115.2 202 38.1
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 6.7e-24 115.2 202 36.6
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 6.7e-24 115.2 199 37.7
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 8.8e-24 114.8 135 42.2
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.1e-23 114.4 206 35.0
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.1e-23 114.4 210 36.2
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.1e-23 114.4 215 35.3
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.1e-23 114.4 200 35.5
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.1e-23 114.4 215 36.7
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.1e-23 114.4 201 37.8
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-23 114.0 213 35.7
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.5e-23 114.0 213 32.9
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.0e-23 113.6 184 36.4
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.6e-23 113.2 209 34.4
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.3e-23 112.8 206 36.9
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.3e-23 112.8 206 36.9
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 4.4e-23 112.5 205 35.1
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 5.7e-23 112.1 205 37.1
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 5.7e-23 112.1 205 34.6
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 7.5e-23 111.7 146 41.8
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 7.5e-23 111.7 213 35.2
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 9.7e-23 111.3 169 38.5
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 9.7e-23 111.3 136 44.1
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.3e-22 110.9 218 35.3
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.3e-22 110.9 196 35.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.3e-22 110.9 210 35.7
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-22 110.9 205 36.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.3e-22 110.9 194 34.0
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.7e-22 110.5 216 34.3
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.2e-22 110.2 198 34.3
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.8e-22 109.8 209 33.0
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.8e-22 109.8 210 37.6
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.7e-22 109.4 209 35.4
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 3.7e-22 109.4 211 37.4
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 4.8e-22 109.0 205 34.6
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.8e-22 109.0 218 32.1
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.3e-22 108.6 229 31.9
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 8.2e-22 108.2 185 38.4
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 8.2e-22 108.2 213 33.3
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 8.2e-22 108.2 200 35.0
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.1e-21 107.8 194 33.0
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.4e-21 107.5 210 33.8
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.4e-21 107.5 204 36.3
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.8e-21 107.1 138 42.8
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 1.8e-21 107.1 207 34.8
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.4e-21 106.7 192 37.0
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.1e-21 106.3 199 34.7
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.1e-21 106.3 194 35.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 4.1e-21 105.9 207 31.4
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 5.3e-21 105.5 141 41.8
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 5.3e-21 105.5 224 32.1
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 5.3e-21 105.5 224 32.6
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 7.0e-21 105.1 193 34.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 9.1e-21 104.8 119 43.7
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 9.1e-21 104.8 153 40.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 2.7e-20 103.2 210 32.9
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.5e-20 102.8 155 39.4
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 5.9e-20 102.1 219 34.2
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 5.9e-20 102.1 216 36.6
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.9e-20 102.1 184 37.0
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.0e-19 101.3 179 36.9
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.0e-19 101.3 229 31.9
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.0e-19 101.3 208 35.1
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.3e-19 100.9 167 38.3
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.7e-19 100.5 139 35.3
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.8e-19 99.4 219 33.8
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 3.8e-19 99.4 221 32.1
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.5e-19 98.6 217 33.2
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 6.5e-19 98.6 224 32.1
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 8.5e-19 98.2 174 33.3
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.2e-18 96.3 152 38.2
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.2e-17 94.4 128 38.3
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-17 94.4 152 37.5
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.6e-17 94.0 123 37.4
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 3.6e-17 92.8 202 33.2
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.4e-16 90.9 98 43.9
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.4e-16 90.9 144 34.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.4e-16 90.9 129 35.7
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.5e-15 87.4 78 47.4
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 9.8e-15 84.7 202 32.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.7e-14 84.0 128 38.3
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.8e-14 83.2 116 41.4
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 3.7e-14 82.8 79 45.6
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 4.8e-14 82.4 116 36.2
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 4.8e-14 82.4 84 48.8
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 6.3e-14 82.0 160 33.1
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 3.1e-13 79.7 147 32.0
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 7.0e-13 78.6 126 37.3
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.5e-12 76.3 98 38.8
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 4.5e-12 75.9 110 44.5
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.0e-11 72.4 173 30.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 8.5e-11 71.6 83 38.6
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.5e-10 70.9 128 34.4
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.1e-09 67.0 73 43.8
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.7e-09 65.9 85 35.3
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.8e-08 63.9 81 43.2
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.3e-06 57.8 120 37.5
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 6.3e-06 55.5 78 38.5


User provided reference genes

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