Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 0.0e+00 1319.7 815 100.0
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 3.5e-304 1048.1 818 82.0
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 1.2e-299 1033.1 814 81.7
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 6.8e-284 980.7 821 77.1
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 9.2e-265 917.1 839 74.3
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 5.1e-263 911.4 829 73.9
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 5.8e-259 897.9 826 72.4
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 6.4e-250 867.8 830 71.7
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 2.4e-241 839.3 859 62.5
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 6.0e-240 834.7 859 62.2
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 1.4e-233 813.5 829 67.6
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 2.8e-181 639.8 844 58.5
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 9.1e-180 634.8 742 62.1
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 1.0e-178 631.3 740 61.2
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 8.8e-175 618.2 740 60.3
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 4.4e-174 615.9 800 57.6
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 2.0e-171 607.1 738 59.9
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 1.0e-170 604.7 882 57.3
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 2.3e-170 603.6 796 57.5
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 3.6e-168 596.3 757 58.8
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 3.6e-168 596.3 742 59.0
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 5.2e-167 592.4 776 56.6
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.0e-166 590.5 786 57.3
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 4.4e-166 589.3 863 54.2
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 7.5e-166 588.6 680 64.0
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.1e-164 584.7 747 52.5
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 1.1e-164 584.7 786 57.0
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 1.1e-164 584.7 749 59.3
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 3.2e-164 583.2 670 64.2
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 5.4e-164 582.4 737 59.6
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 7.0e-164 582.0 837 55.3
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 2.0e-163 580.5 866 53.6
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 2.7e-163 580.1 869 53.4
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 2.3e-162 577.0 664 63.1
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 3.9e-162 576.2 851 55.7
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 5.0e-162 575.9 754 51.2
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 1.1e-161 574.7 852 56.3
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 1.1e-161 574.7 521 79.3
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.5e-161 574.3 671 62.9
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 2.1e-160 570.5 754 56.1
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 2.1e-160 570.5 754 56.1
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 3.6e-160 569.7 753 57.2
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 6.8e-159 565.5 660 62.7
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 1.2e-158 564.7 754 56.1
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 1.5e-158 564.3 856 52.6
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 4.4e-158 562.8 658 63.7
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 7.5e-158 562.0 751 56.5
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 7.5e-158 562.0 751 56.5
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 1.3e-157 561.2 753 56.2
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 2.9e-157 560.1 745 56.9
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.4e-156 557.0 751 51.9
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 1.2e-155 554.7 743 56.5
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 7.8e-155 552.0 629 64.4
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 3.9e-154 549.7 776 49.0
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 3.9e-154 549.7 740 58.1
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 1.9e-153 547.4 748 57.0
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 2.5e-153 547.0 750 56.3
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 4.7e-152 542.7 760 57.1
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 4.0e-151 539.7 659 61.6
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 4.9e-149 532.7 737 59.4
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 5.4e-148 529.3 776 48.3
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 8.6e-146 521.9 741 56.3
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 9.5e-145 518.5 737 55.2
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 1.6e-144 517.7 811 52.3
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 4.7e-144 516.2 742 55.1
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 4.7e-144 516.2 746 54.4
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 4.0e-143 513.1 746 54.3
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 8.9e-143 511.9 742 56.9
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 2.6e-142 510.4 702 54.6
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 9.9e-142 508.4 723 56.7
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.7e-141 507.7 743 49.9
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 6.4e-141 505.8 802 51.1
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 2.4e-140 503.8 763 53.1
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 3.2e-140 503.4 836 51.8
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 2.1e-139 500.7 746 46.0
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 2.1e-139 500.7 751 50.6
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 1.3e-138 498.0 740 55.4
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 6.6e-138 495.7 752 53.9
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.5e-137 494.6 765 46.4
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 7.3e-137 492.3 691 57.6
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 9.6e-137 491.9 688 58.3
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 2.1e-136 490.7 768 52.3
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 7.6e-134 482.3 757 51.0
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 8.7e-130 468.8 593 61.9
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.1e-127 461.8 742 39.9
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 7.9e-123 445.7 808 49.4
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 5.3e-119 433.0 743 43.5
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 1.3e-117 428.3 654 54.3
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 3.7e-96 357.1 751 45.3
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 5.5e-84 316.6 536 55.8
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 2.3e-82 311.2 659 33.2
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 6.3e-80 303.1 389 58.6
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 1.4e-79 302.0 457 51.6
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.1e-75 288.1 700 44.9
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 7.0e-71 273.1 403 59.8
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 2.9e-53 214.5 597 42.7
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 8.6e-53 213.0 235 51.1
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.9e-52 211.8 669 40.8
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 1.3e-45 189.1 232 49.6
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 8.3e-40 169.9 315 49.8
Medtr7g061155 Medicago truncatula HOM05D000666 ORTHO05D001431 6.0e-38 163.7 157 62.4
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 3.0e-37 161.4 444 36.0
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 2.0e-33 148.7 181 44.2
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.4e-23 115.2 212 34.4
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.1e-18 99.8 74 64.9
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 3.3e-12 78.2 106 38.7
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 5.6e-12 77.4 249 27.7
BcaB05g21499 Brassica carinata HOM05D007251 ORTHO05D009266 1.1e-10 73.2 226 27.0
A02p00600 Brassica napus HOM05D007251 ORTHO05D009266 9.0e-10 70.1 226 27.4
BraA02t05043Z Brassica rapa HOM05D007251 ORTHO05D009266 2.0e-09 68.9 226 27.0
BolC2t06419H Brassica oleracea HOM05D007251 ORTHO05D009266 3.4e-09 68.2 226 26.5
Sp6g32780 Schrenkiella parvula HOM05D007251 ORTHO05D009266 4.5e-09 67.8 226 27.4
MD08G1128000 Malus domestica HOM05D007251 ORTHO05D009266 5.8e-09 67.4 148 33.8
C02p04590 Brassica napus HOM05D007251 ORTHO05D009266 9.9e-09 66.6 226 26.5
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 1.3e-08 66.2 192 26.0
BcaC03g13325 Brassica carinata HOM05D007251 ORTHO05D009266 1.3e-08 66.2 226 26.5
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 3.8e-08 64.7 189 22.8
AL5G34050 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 4.9e-08 64.3 192 26.0
CARHR163140 Cardamine hirsuta HOM05D001779 ORTHO05D001753 4.9e-08 64.3 198 25.8
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 4.9e-08 64.3 163 53.4
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 6.4e-08 63.9 148 27.0
Nn8g40494 Nelumbo nucifera HOM05D007251 ORTHO05D009266 8.4e-08 63.5 150 31.3
FvH4_2g36670 Fragaria vesca HOM05D007251 ORTHO05D009266 4.2e-07 61.2 285 26.3
Prupe.1G459800 Prunus persica HOM05D007251 ORTHO05D009266 5.4e-07 60.8 148 31.8
Haze_07463 Corylus avellana HOM05D000001 ORTHO05D000003 7.1e-07 60.5 175 25.7
Thhalv10011131m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 7.1e-07 60.5 188 23.9
Cfa019110 Carpinus fangiana HOM05D000001 ORTHO05D000003 9.3e-07 60.1 175 25.7
Ciclev10010499m.g Citrus clementina HOM05D007251 ORTHO05D009266 9.3e-07 60.1 118 34.7
EL10Ac2g04350 Beta vulgaris HOM05D001779 ORTHO05D001753 1.2e-06 59.7 159 25.2
CiPaw.12G026000 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.2e-06 59.7 136 29.4
Medtr5g040920 Medicago truncatula HOM05D000001 ORTHO05D000003 1.2e-06 59.7 239 23.8
ATR0626G121 Amborella trichopoda HOM05D001779 ORTHO05D001753 1.6e-06 59.3 156 24.4
Eucgr.G03360 Eucalyptus grandis HOM05D001779 ORTHO05D001753 1.6e-06 59.3 192 22.9
Glyma.10G012200 Glycine max HOM05D000001 ORTHO05D007291 1.6e-06 59.3 252 21.4
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 1.6e-06 59.3 192 24.0
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 2.1e-06 58.9 170 22.4
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 2.1e-06 58.9 181 27.1
AT5G10690 Arabidopsis thaliana HOM05D007251 ORTHO05D009266 2.7e-06 58.5 221 25.3
EL10Ac5g10989 Beta vulgaris HOM05D002453 ORTHO05D002107 2.7e-06 58.5 170 22.4
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 2.7e-06 58.5 185 24.9
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 3.5e-06 58.2 170 21.2
Duzib168G1420 Durio zibethinus HOM05D007251 ORTHO05D009266 4.6e-06 57.8 251 25.9
CARHR202630 Cardamine hirsuta HOM05D007251 ORTHO05D009266 6.0e-06 57.4 220 23.6
ECA232G3256 Erigeron canadensis HOM05D001779 ORTHO05D001753 6.0e-06 57.4 167 25.1
CANSAT25G3804 Cannabis sativa HOM05D000001 ORTHO05D000003 7.9e-06 57.0 166 25.3
Carub.0006s0915 Capsella rubella HOM05D007251 ORTHO05D009266 7.9e-06 57.0 81 38.3
CiPaw.08G020100 Carya illinoinensis HOM05D007251 ORTHO05D009266 7.9e-06 57.0 149 30.2
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 7.9e-06 57.0 125 30.4


User provided reference genes

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