Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 2.6e-308 1061.2 544 100.0
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 7.2e-274 946.8 550 88.9
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 1.7e-262 909.1 551 86.2
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 1.2e-239 833.2 552 78.4
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 5.4e-229 797.7 555 73.9
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 7.8e-228 793.9 559 75.3
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.8e-225 784.6 556 73.0
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 8.1e-225 783.9 547 74.8
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.8e-224 782.7 483 79.9
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 1.8e-224 782.7 544 73.3
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.2e-223 780.0 539 73.5
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 4.5e-223 778.1 512 76.0
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.3e-222 776.5 556 72.8
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.7e-222 776.2 552 72.1
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 2.2e-222 775.8 517 75.4
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 2.9e-222 775.4 555 73.5
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 5.4e-221 771.2 558 72.0
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.6e-220 769.6 558 71.5
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 2.1e-220 769.2 556 71.9
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 4.6e-220 768.1 565 70.1
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 4.6e-220 768.1 491 78.2
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 6.0e-220 767.7 559 69.9
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 7.9e-220 767.3 556 71.4
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 1.0e-219 766.9 552 72.5
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 1.3e-219 766.5 556 71.2
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 1.3e-219 766.5 509 75.4
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 1.8e-219 766.1 560 71.8
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.3e-219 765.8 553 70.3
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 3.0e-219 765.4 556 70.7
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 3.9e-219 765.0 553 70.2
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 5.1e-219 764.6 544 72.6
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 5.1e-219 764.6 475 78.9
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.1e-218 763.5 551 72.6
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 1.5e-218 763.1 477 78.0
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.9e-218 762.7 477 77.8
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 3.3e-218 761.9 548 71.2
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 4.3e-218 761.5 491 77.0
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 5.6e-218 761.1 476 78.8
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 5.6e-218 761.1 546 70.7
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 9.6e-218 760.4 476 78.4
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.6e-217 759.6 489 76.7
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 2.1e-217 759.2 554 70.9
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 3.7e-217 758.4 489 77.7
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 3.7e-217 758.4 554 70.4
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 6.2e-217 757.7 548 71.7
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 1.4e-216 756.5 550 70.0
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 1.4e-216 756.5 550 70.0
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 3.1e-216 755.4 543 71.1
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.2e-215 753.4 555 70.8
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.0e-215 752.7 555 69.7
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 9.9e-215 750.4 553 69.8
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 3.8e-214 748.4 474 78.3
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 4.9e-214 748.0 550 70.4
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 6.4e-214 747.7 485 76.9
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 3.2e-213 745.3 556 70.0
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 9.3e-213 743.8 470 77.2
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 1.2e-212 743.4 478 75.9
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 2.1e-212 742.7 481 76.9
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 3.5e-212 741.9 544 70.4
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 7.9e-212 740.7 544 70.2
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 6.7e-211 737.6 554 68.8
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 2.5e-210 735.7 475 76.2
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 3.3e-210 735.3 579 67.2
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 4.3e-210 734.9 496 73.4
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 5.6e-210 734.6 478 75.3
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 5.6e-210 734.6 490 73.7
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 5.6e-210 734.6 566 67.8
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 7.4e-210 734.2 478 75.5
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 7.4e-210 734.2 478 75.3
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 9.6e-210 733.8 578 67.3
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 1.3e-209 733.4 478 75.3
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 6.2e-209 731.1 475 75.4
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.4e-208 729.9 553 69.3
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 3.1e-208 728.8 559 68.5
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 5.3e-208 728.0 491 73.7
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 6.9e-208 727.6 471 75.4
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 6.9e-208 727.6 469 75.7
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 5.8e-207 724.5 556 68.0
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 7.6e-207 724.2 410 87.6
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.2e-206 722.6 492 71.5
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.1e-205 720.3 472 75.2
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.9e-205 719.5 472 75.0
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 2.5e-205 719.2 489 72.8
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 5.5e-205 718.0 462 76.0
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 4.6e-204 714.9 474 74.7
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.0e-203 713.8 494 73.3
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.8e-203 713.0 548 67.5
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.8e-203 713.0 548 67.5
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 6.7e-203 711.1 550 66.9
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 3.3e-202 708.8 438 79.9
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 2.0e-199 699.5 545 66.4
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 2.6e-199 699.1 465 72.7
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 2.2e-198 696.0 487 69.8
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.0e-194 682.9 447 75.6
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 2.5e-194 682.6 545 65.7
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.2e-193 679.5 425 77.9
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.8e-193 679.1 487 67.6
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 6.3e-193 677.9 540 64.4
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 9.4e-189 664.1 490 69.0
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.8e-184 649.8 476 64.1
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.9e-182 642.5 470 65.7
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.2e-181 639.0 470 65.1
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 9.4e-181 637.5 470 64.9
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 2.6e-175 619.4 466 68.2
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 6.5e-174 614.8 460 66.1
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 4.2e-173 612.1 513 59.8
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 4.7e-172 608.6 552 58.9
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.0e-171 607.4 431 71.7
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 3.3e-170 602.4 548 59.9
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 5.3e-168 595.1 478 62.8
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 7.0e-168 594.7 529 57.7
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 3.7e-161 572.4 478 64.0
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.5e-157 559.7 481 56.1
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 2.5e-157 559.7 480 58.3
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 8.0e-156 554.7 475 55.4
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.8e-155 553.5 476 57.1
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.7e-143 513.1 448 61.8
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 9.8e-138 494.6 481 50.9
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.7e-137 493.8 372 69.6
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 1.7e-129 467.2 307 76.2
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 7.1e-128 461.8 317 73.5
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 2.2e-121 440.3 493 46.7
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.8e-115 420.6 489 45.2
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 8.2e-68 262.3 163 76.7
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.7e-60 238.0 475 31.8
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 1.2e-53 215.3 133 78.2
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 7.2e-40 169.5 102 77.5
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 2.7e-34 151.0 72 97.2
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 2.9e-33 147.5 431 26.7
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.3e-22 111.3 80 76.2
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 8.9e-14 82.8 51 76.5
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 9.9e-13 79.3 480 22.1
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 2.9e-12 77.8 413 25.4


User provided reference genes

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