Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 3.7e-87 325.1 195 100.0
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 2.5e-51 206.1 156 85.9
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 1.7e-47 193.4 143 75.5
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 8.3e-47 191.0 146 71.9
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 3.5e-37 159.1 141 64.5
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 4.6e-37 158.7 146 61.0
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 6.0e-37 158.3 145 71.7
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 6.0e-37 158.3 145 71.7
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 6.0e-37 158.3 137 64.2
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 2.3e-36 156.4 162 56.8
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 2.1e-29 133.3 158 50.6
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 2.1e-29 133.3 194 46.4
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 8.1e-26 121.3 128 50.8
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 1.8e-25 120.2 165 47.9
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 1.2e-24 117.5 128 52.3
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 2.6e-24 116.3 132 51.5
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 3.4e-24 115.9 130 52.3
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 4.5e-24 115.5 127 49.6
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 5.8e-24 115.2 130 59.2
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 3.8e-23 112.5 132 67.4
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 9.3e-22 107.8 129 48.8
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 1.6e-21 107.1 150 39.3
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 2.1e-21 106.7 128 46.9
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 2.1e-21 106.7 120 47.5
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 2.7e-21 106.3 125 50.4
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 4.6e-21 105.5 129 47.3
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 3.9e-20 102.4 128 60.2
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 5.6e-19 98.6 129 45.7
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 1.6e-18 97.1 82 62.2
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 4.8e-18 95.5 128 60.9
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.4e-17 94.0 128 45.3
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 5.3e-17 92.0 80 60.0
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 2.0e-16 90.1 74 59.5
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 2.6e-16 89.7 77 57.1
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 4.5e-16 89.0 76 61.8
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 7.6e-16 88.2 126 45.2
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 9.9e-16 87.8 132 40.2
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 9.9e-16 87.8 128 41.4
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.3e-15 87.4 128 39.8
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 1.7e-15 87.0 128 48.4
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 2.9e-15 86.3 127 57.5
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 3.8e-15 85.9 76 64.5
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 6.4e-15 85.1 128 39.8
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 8.4e-15 84.7 149 35.6
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 1.1e-14 84.3 128 53.1
TPR.G39060 Trifolium pratense HOM05D007214 ORTHO05D008907 1.4e-14 84.0 62 67.7
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 1.9e-14 83.6 140 49.3
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 4.2e-14 82.4 97 47.4
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 7.1e-14 81.6 129 51.2
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 1.2e-13 80.9 128 54.7
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 2.1e-13 80.1 128 53.1
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 3.5e-13 79.3 122 54.1
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 3.5e-13 79.3 122 54.1
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 4.6e-13 79.0 61 67.2
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 6.0e-13 78.6 165 46.7
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 6.0e-13 78.6 165 46.7
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 6.0e-13 78.6 128 53.9
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 7.9e-13 78.2 147 51.0
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 3.0e-12 76.3 124 38.7
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 1.1e-11 74.3 69 59.4
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 1.1e-11 74.3 142 47.9
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 3.3e-11 72.8 164 43.9
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 5.6e-11 72.0 128 44.5
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 2.1e-10 70.1 146 50.7
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 2.8e-10 69.7 127 46.5
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 6.2e-10 68.6 70 47.1
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 1.1e-09 67.8 75 46.7
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 1.4e-09 67.4 138 47.8
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 4.0e-09 65.9 61 57.4
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 5.3e-09 65.5 128 39.1
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 2.0e-08 63.5 48 64.6
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 2.0e-08 63.5 130 45.4
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 3.4e-08 62.8 109 37.6
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 3.4e-08 62.8 126 50.8
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 5.8e-08 62.0 128 49.2
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 1.0e-07 61.2 146 41.1
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 1.7e-07 60.5 128 50.0
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 1.7e-07 60.5 78 42.3
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 2.2e-07 60.1 128 32.8
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 4.9e-07 58.9 82 43.9
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 6.5e-07 58.5 78 42.3
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 1.1e-06 57.8 130 47.7
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 1.4e-06 57.4 84 39.3
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 1.9e-06 57.0 53 56.6
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.5e-06 56.6 56 50.0
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 3.2e-06 56.2 106 55.7


User provided reference genes

Program Settings