Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 6.7e-248 860.1 409 100.0
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 2.1e-217 758.8 408 88.7
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 2.0e-207 725.7 409 84.8
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 1.2e-201 706.4 407 83.5
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 1.2e-180 636.7 405 74.6
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.4e-173 612.5 405 71.9
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 3.2e-173 612.1 411 71.5
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 7.1e-173 610.9 418 70.8
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 7.8e-172 607.4 391 73.9
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 1.1e-170 603.6 415 70.8
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 6.2e-169 597.8 364 76.1
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 5.3e-168 594.7 405 71.9
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 4.4e-167 591.7 362 76.8
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 2.4e-165 585.9 395 72.2
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 7.9e-156 554.3 368 68.8
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 5.1e-155 551.6 369 71.5
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 1.1e-149 533.9 366 66.1
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 3.9e-147 525.4 368 64.4
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 5.1e-147 525.0 370 64.9
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 3.3e-146 522.3 398 62.8
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 4.3e-146 521.9 369 64.8
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 4.3e-146 521.9 373 63.8
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 1.1e-144 517.3 372 62.6
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 1.1e-144 517.3 372 62.6
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 5.3e-144 515.0 394 62.9
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 1.5e-143 513.5 414 59.4
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.0e-143 513.1 404 62.6
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 5.8e-143 511.5 408 60.0
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 1.0e-142 510.8 361 66.5
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 3.8e-142 508.8 369 63.4
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 6.5e-142 508.1 423 58.4
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 1.9e-141 506.5 385 62.6
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 2.5e-141 506.1 369 62.3
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 3.2e-141 505.8 363 63.4
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 9.3e-141 504.2 367 64.3
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 9.3e-141 504.2 413 61.0
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 9.3e-141 504.2 411 58.6
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 1.6e-140 503.4 368 64.1
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.6e-140 503.4 365 65.2
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 2.7e-140 502.7 368 64.1
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 3.5e-140 502.3 365 64.9
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 6.1e-140 501.5 365 64.9
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 7.9e-140 501.1 367 62.9
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 1.9e-138 496.5 363 62.3
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 4.3e-138 495.4 412 57.3
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 7.4e-138 494.6 347 66.3
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 2.2e-137 493.0 369 59.6
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 4.8e-137 491.9 368 60.1
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 6.3e-137 491.5 395 57.5
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 8.2e-137 491.1 387 58.4
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 1.1e-136 490.7 366 63.1
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 1.4e-136 490.3 422 56.6
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 1.8e-136 490.0 385 59.5
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.4e-136 489.6 366 63.7
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.4e-136 489.6 373 63.3
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 2.4e-136 489.6 365 63.0
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 1.0e-134 484.2 365 60.0
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.3e-134 483.8 367 61.9
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 1.3e-134 483.8 367 59.7
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 3.8e-134 482.3 367 62.7
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 6.5e-134 481.5 394 57.1
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 2.5e-133 479.6 366 59.0
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 3.2e-133 479.2 412 56.3
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 7.2e-133 478.0 395 56.5
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 9.4e-133 477.6 361 62.6
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 2.3e-131 473.0 387 57.9
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 3.9e-131 472.2 365 59.7
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 8.8e-131 471.1 393 56.0
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 2.8e-129 466.1 404 59.2
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 2.8e-129 466.1 364 61.0
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 4.8e-129 465.3 416 54.8
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 1.1e-128 464.2 370 58.6
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 1.4e-128 463.8 364 59.1
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 2.4e-128 463.0 366 59.0
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 2.0e-127 459.9 360 59.4
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 3.4e-127 459.1 411 55.0
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 3.4e-127 459.1 337 61.7
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 5.9e-127 458.4 416 54.3
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 2.9e-126 456.1 390 55.6
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 3.8e-126 455.7 363 60.3
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 6.5e-126 454.9 360 56.9
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 3.2e-125 452.6 373 56.6
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 5.5e-125 451.8 360 58.6
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 5.5e-125 451.8 362 58.0
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 1.6e-124 450.3 360 58.9
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 2.1e-124 449.9 364 59.6
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 1.4e-123 447.2 366 56.8
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.8e-123 446.8 362 59.7
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 3.0e-123 446.0 365 57.8
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 6.7e-123 444.9 365 58.9
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 1.1e-122 444.1 364 59.3
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 1.8e-120 436.8 362 56.4
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 9.1e-120 434.5 413 53.0
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 2.6e-119 433.0 367 55.3
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 2.9e-118 429.5 415 53.7
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 4.2e-117 425.6 384 52.9
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 2.1e-116 423.3 387 53.2
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 1.4e-115 420.6 369 55.0
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 2.4e-112 409.8 317 57.7
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 3.1e-112 409.5 317 57.7
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 4.1e-112 409.1 407 52.1
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 7.0e-112 408.3 377 54.6
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 1.0e-107 394.4 403 50.4
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 1.6e-100 370.5 402 49.3
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 8.8e-99 364.8 393 48.6
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 2.6e-98 363.2 400 47.8
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 8.3e-97 358.2 272 61.4
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 9.1e-96 354.8 278 57.9
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 3.5e-95 352.8 310 54.2
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 7.2e-93 345.1 419 47.0
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.5e-90 337.4 373 47.7
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 3.4e-90 336.3 402 42.8
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 6.3e-89 332.0 422 42.2
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 1.3e-86 324.3 333 50.5
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 7.3e-85 318.5 377 44.6
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.2e-84 317.8 390 42.6
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 1.0e-83 314.7 425 43.3
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 8.9e-83 311.6 198 74.2
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 3.5e-79 299.7 482 38.8
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 9.5e-77 291.6 352 42.3
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 3.6e-76 289.7 289 49.1
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.6e-68 264.2 255 52.9
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 1.9e-64 250.8 124 91.9
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 7.1e-64 248.8 347 41.8
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 7.6e-58 228.8 416 33.7
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 4.2e-56 223.0 140 70.7
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 4.9e-49 199.5 154 61.0
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 3.5e-47 193.4 205 48.3
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 6.2e-44 182.6 153 58.2
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 6.2e-44 182.6 143 62.2
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 1.6e-39 167.9 182 47.3
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 8.1e-36 155.6 107 63.6
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 6.9e-35 152.5 95 69.5
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 1.2e-34 151.8 478 28.5
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 1.5e-34 151.4 132 52.3
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 9.3e-32 142.1 359 31.8
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 4.6e-31 139.8 92 67.4
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 8.7e-30 135.6 406 28.6
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 4.3e-29 133.3 153 47.7
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 4.3e-29 133.3 83 66.3
Glyma.11G155468 Glycine max HOM05D005189 ORTHO05D006093 1.6e-28 131.3 94 70.2
Lj1A21T72 Lonicera japonica HOM05D005189 ORTHO05D006093 2.6e-26 124.0 75 74.7
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.8e-22 111.3 103 51.5
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 5.1e-22 109.8 153 40.5
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.3e-17 95.1 94 47.9
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 9.4e-16 89.0 347 27.7
TAR633G0010 Trochodendron aralioides HOM05D000322 ORTHO05D000186 1.6e-15 88.2 54 72.2
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 4.3e-13 80.1 368 26.6
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 9.7e-13 79.0 65 61.5
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 3.7e-12 77.0 356 26.4
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 1.4e-11 75.1 49 63.3
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.8e-11 74.7 356 26.1
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 3.4e-10 70.5 354 23.4
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 7.7e-10 69.3 54 51.9
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 7.7e-10 69.3 376 26.3
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 1.7e-09 68.2 344 23.3
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 2.9e-09 67.4 342 22.8
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 3.8e-09 67.0 357 23.5
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 5.0e-09 66.6 361 25.8
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 5.0e-09 66.6 343 23.0
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 1.9e-08 64.7 358 23.5
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 4.2e-08 63.5 361 24.1
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 5.5e-08 63.2 378 21.7
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 7.2e-08 62.8 355 22.0
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 9.4e-08 62.4 354 22.0
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 9.4e-08 62.4 363 23.7
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 9.4e-08 62.4 349 23.8
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 2.1e-07 61.2 357 23.5
arahy.Tifrunner.gnm1.ann1.V7ULXX Arachis hypogaea HOM05D005189 ORTHO05D006093 2.1e-07 61.2 32 75.0
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 2.7e-07 60.8 373 23.6
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 6.1e-07 59.7 382 20.9
EL10Ac9g21113 Beta vulgaris HOM05D005189 ORTHO05D006093 1.8e-06 58.2 51 49.0
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 2.3e-06 57.8 324 24.7
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 3.0e-06 57.4 350 23.1
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 3.9e-06 57.0 358 25.1
EL10Ac9g21117 Beta vulgaris HOM05D039630 ORTHO05D090184 5.1e-06 56.6 97 36.1
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 5.1e-06 56.6 98 33.7
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 8.8e-06 55.8 345 24.9


User provided reference genes

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