Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 5.2e-141 504.6 296 100.0
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.3e-61 238.8 300 52.0
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 5.5e-58 228.8 278 53.6
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 6.1e-57 225.3 280 52.9
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 4.3e-55 219.2 280 51.1
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 5.7e-55 218.8 280 51.4
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 7.4e-55 218.4 280 51.8
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.8e-54 216.5 280 50.7
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 2.4e-53 213.4 280 50.0
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 7.2e-50 201.8 278 47.8
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.8e-48 197.2 154 74.7
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 5.7e-47 192.2 286 57.0
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 4.1e-45 186.0 273 49.5
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.2e-44 184.5 278 46.8
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 6.5e-43 178.7 280 47.9
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 2.5e-42 176.8 279 44.8
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 7.2e-42 175.3 265 46.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 6.1e-41 172.2 280 49.6
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 3.9e-40 169.5 283 49.8
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 8.8e-40 168.3 273 48.4
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 4.4e-39 166.0 130 75.4
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 7.4e-39 165.2 273 44.3
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 7.4e-39 165.2 274 44.2
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 9.7e-39 164.9 275 47.6
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-38 164.1 273 45.8
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 4.8e-38 162.5 283 43.1
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 4.8e-38 162.5 276 48.9
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.1e-37 161.4 273 45.1
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.1e-37 161.4 273 45.1
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.8e-37 160.6 276 47.8
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 2.4e-37 160.2 121 72.7
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 3.1e-37 159.8 276 48.6
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 4.1e-37 159.5 281 46.6
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 4.1e-37 159.5 276 48.2
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 5.3e-37 159.1 280 43.6
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 7.0e-37 158.7 273 44.0
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.6e-36 157.5 280 42.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 2.0e-36 157.1 273 46.2
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 3.5e-36 156.4 285 48.4
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 4.5e-36 156.0 269 48.0
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 5.9e-36 155.6 281 41.3
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.0e-35 154.8 273 41.4
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.3e-35 154.5 271 43.9
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.3e-35 154.5 272 42.6
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 5.0e-35 152.5 280 46.8
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 8.5e-35 151.8 272 41.5
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.1e-34 151.4 293 41.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.1e-34 151.4 280 42.1
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.5e-34 151.0 271 42.1
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 5.5e-34 149.1 294 42.2
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.2e-33 147.9 267 46.8
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 2.1e-33 147.1 286 42.0
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.7e-33 146.7 103 78.6
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 4.7e-33 146.0 280 46.4
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 8.0e-33 145.2 267 47.6
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 8.0e-33 145.2 272 46.0
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.0e-32 144.8 284 40.8
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.4e-32 144.4 278 41.7
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-32 144.4 275 40.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.8e-32 144.1 278 43.5
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.3e-32 143.7 145 58.6
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 4.0e-32 142.9 273 40.7
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 4.0e-32 142.9 276 41.3
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 4.0e-32 142.9 270 41.5
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 6.7e-32 142.1 273 39.2
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 8.8e-32 141.7 286 47.2
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.2e-31 141.4 278 42.4
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.2e-31 141.4 279 41.2
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.5e-31 141.0 280 41.8
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.0e-31 140.6 273 46.5
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 5.7e-31 139.0 273 39.9
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 7.5e-31 138.7 300 46.7
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.3e-30 137.9 287 41.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.3e-30 137.9 281 43.4
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.3e-30 137.9 281 43.1
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.7e-30 137.5 264 46.2
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.2e-30 137.1 264 45.8
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.8e-30 136.7 300 46.7
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 6.3e-30 135.6 294 42.2
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.4e-29 134.4 277 43.3
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.4e-29 134.4 277 44.0
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.4e-29 134.4 280 42.1
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.4e-29 133.7 280 39.3
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 5.3e-29 132.5 273 41.8
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 7.0e-29 132.1 106 69.8
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.7e-28 130.2 278 41.7
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 4.5e-28 129.4 266 44.0
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 5.9e-28 129.0 279 39.1
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 7.7e-28 128.6 273 42.5
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.3e-27 127.9 280 41.4
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.3e-27 127.9 278 41.4
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.7e-27 127.5 280 41.4
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 5.0e-27 125.9 280 37.5
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 6.5e-27 125.6 134 59.0
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 8.5e-27 125.2 112 63.4
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 8.5e-27 125.2 294 38.1
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.1e-26 124.8 263 39.9
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 3.2e-26 123.2 280 40.7
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 6.1e-25 119.0 269 47.6
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.4e-24 117.9 280 40.0
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.8e-24 117.5 276 36.2
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 2.3e-24 117.1 275 39.3
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.0e-24 116.3 151 52.3
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 4.0e-24 116.3 280 36.1
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 4.0e-24 116.3 287 42.2
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 5.2e-24 115.9 288 45.5
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.2e-23 114.8 259 47.9
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.2e-23 114.8 288 37.8
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.0e-23 114.0 229 40.2
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 4.4e-23 112.8 261 34.1
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 4.8e-22 109.4 287 42.9
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.6e-20 104.4 271 41.7
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 5.9e-20 102.4 268 38.4
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 7.7e-20 102.1 124 55.6
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 2.3e-19 100.5 280 33.6
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 5.0e-19 99.4 96 59.4
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.0e-19 99.4 146 46.6
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 5.0e-19 99.4 275 43.6
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.5e-18 97.8 267 35.2
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.1e-17 94.0 285 42.1
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 2.1e-17 94.0 134 47.0
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.7e-17 92.8 268 34.0
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.0e-16 91.7 272 32.0
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.3e-16 90.5 174 42.0
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 3.0e-16 90.1 253 34.0
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.2e-16 89.4 144 46.5
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.2e-16 89.4 144 46.5
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.2e-15 88.2 222 36.9
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.6e-15 87.0 261 37.2
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.4e-15 86.3 271 32.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 7.5e-15 85.5 209 36.8
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 4.9e-14 82.8 288 36.5
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 7.8e-12 75.5 245 38.4
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-11 74.7 188 34.0
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.3e-11 74.7 71 54.9
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.8e-11 73.2 209 40.2
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 9.5e-10 68.6 47 76.6
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 4.7e-09 66.2 94 45.7
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.2e-07 61.6 273 36.6
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 2.0e-07 60.8 221 39.4
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.4e-07 60.1 45 73.3
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 3.4e-07 60.1 192 31.8
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 9.8e-07 58.5 254 28.0
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.8e-07 58.5 88 46.6
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.7e-06 57.8 51 66.7
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.7e-06 57.8 51 66.7
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.7e-06 57.8 51 66.7
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 6.4e-06 55.8 76 42.1


User provided reference genes

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