Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.0e-116 423.7 265 100.0
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 3.8e-111 405.2 265 81.1
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.4e-108 396.7 265 78.5
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 8.5e-103 377.5 252 79.0
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 5.4e-97 358.2 265 72.1
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 7.0e-97 357.8 265 72.1
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 9.1e-97 357.5 265 71.3
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.6e-96 356.7 265 72.1
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.0e-96 356.3 265 70.6
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.7e-96 355.9 265 71.3
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.7e-96 355.9 265 71.7
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 2.7e-96 355.9 265 71.3
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 4.5e-96 355.1 260 73.1
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 7.7e-96 354.4 265 70.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.7e-95 353.2 260 72.7
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.3e-95 352.8 265 69.1
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.9e-95 352.4 265 70.2
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.9e-95 352.4 265 70.6
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 2.9e-95 352.4 265 69.8
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 8.6e-95 350.9 265 68.7
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 8.6e-95 350.9 264 70.5
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.1e-94 350.5 265 70.2
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.1e-94 350.5 260 70.8
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 1.5e-94 350.1 265 70.6
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.5e-94 350.1 265 69.8
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 1.9e-94 349.7 259 71.4
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 3.3e-94 349.0 265 70.2
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 1.2e-93 347.1 265 69.1
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.2e-93 347.1 260 71.2
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.2e-93 347.1 265 70.6
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.2e-93 347.1 265 69.1
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 1.2e-93 347.1 265 67.9
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.2e-93 347.1 259 71.0
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.1e-93 346.3 258 71.3
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 2.1e-93 346.3 265 69.8
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 3.6e-93 345.5 260 70.0
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.7e-93 345.1 265 68.7
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 6.1e-93 344.7 260 70.4
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 8.0e-93 344.4 266 68.4
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.0e-92 344.0 265 67.9
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.0e-92 344.0 266 69.2
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.4e-92 343.6 263 69.2
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.4e-92 343.6 265 67.5
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.4e-92 343.6 260 69.6
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.4e-92 343.6 268 69.4
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.4e-92 343.6 260 70.4
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.8e-92 343.2 260 70.0
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.3e-92 342.8 263 69.6
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 2.3e-92 342.8 265 67.5
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.3e-92 342.8 258 69.4
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.3e-92 342.8 266 68.8
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 3.0e-92 342.4 263 69.2
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 4.0e-92 342.0 265 66.8
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 4.0e-92 342.0 266 68.8
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 5.2e-92 341.7 257 69.6
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 6.8e-92 341.3 267 68.9
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 6.8e-92 341.3 265 68.7
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.5e-91 340.1 267 68.9
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 2.0e-91 339.7 255 69.8
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.0e-91 339.7 256 69.9
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.6e-91 339.3 263 68.4
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 4.4e-91 338.6 265 67.5
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 4.4e-91 338.6 265 67.5
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 5.7e-91 338.2 254 70.9
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 5.7e-91 338.2 265 66.4
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 5.7e-91 338.2 265 67.2
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.5e-91 337.8 260 69.2
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 9.8e-91 337.4 265 66.8
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 9.8e-91 337.4 251 70.5
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.3e-90 337.0 265 67.2
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.3e-90 337.0 265 66.4
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.3e-90 337.0 262 67.9
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.2e-90 336.3 252 69.0
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 3.7e-90 335.5 262 67.2
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 4.9e-90 335.1 265 66.4
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.9e-90 335.1 265 66.8
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 8.3e-90 334.3 265 66.0
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 1.1e-89 334.0 265 66.8
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.1e-89 334.0 262 68.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.4e-89 332.8 256 68.8
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 3.1e-89 332.4 264 65.9
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 3.1e-89 332.4 265 66.4
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 4.1e-89 332.0 265 67.2
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 4.1e-89 332.0 245 71.8
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 5.4e-89 331.6 258 69.4
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.6e-88 330.1 252 68.7
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.6e-88 330.1 259 67.2
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.0e-88 329.7 265 65.3
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 2.7e-88 329.3 263 66.9
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.5e-88 328.9 271 66.1
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 3.5e-88 328.9 265 65.3
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 4.5e-88 328.6 265 65.7
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 4.5e-88 328.6 253 68.4
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 7.8e-88 327.8 262 66.0
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.3e-87 326.2 258 66.7
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.1e-86 323.9 257 66.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.5e-86 323.6 251 66.1
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.5e-86 322.8 244 69.3
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.5e-86 322.8 251 67.3
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.5e-86 322.8 251 67.3
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 7.3e-86 321.2 263 66.9
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 2.8e-85 319.3 265 63.4
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 2.3e-84 316.2 241 68.9
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 2.3e-84 316.2 246 67.9
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 4.0e-84 315.5 242 69.0
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.5e-83 313.5 253 64.4
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 2.0e-83 313.2 233 71.2
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 3.4e-83 312.4 241 68.0
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 7.5e-83 311.2 243 67.1
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 8.3e-82 307.8 244 66.8
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 5.4e-81 305.1 251 63.3
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 4.6e-80 302.0 265 61.9
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.5e-78 297.0 240 67.1
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 7.3e-78 294.7 252 61.9
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 4.0e-76 288.9 229 65.5
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 5.2e-76 288.5 228 67.5
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.0e-75 286.6 250 61.2
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 5.8e-75 285.0 265 60.0
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.3e-71 273.9 233 63.5
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 8.6e-71 271.2 252 58.3
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.9e-70 270.0 221 67.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 5.6e-70 268.5 201 71.1
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 8.9e-68 261.2 266 55.3
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 9.9e-67 257.7 268 53.0
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.1e-63 245.4 267 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.9e-62 243.4 247 55.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 5.6e-62 241.9 201 62.7
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 4.7e-61 238.8 265 54.7
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 3.4e-59 232.6 230 57.8
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.7e-58 230.3 239 59.4
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 3.8e-58 229.2 142 77.5
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 6.4e-58 228.4 197 60.4
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 1.1e-57 227.6 234 56.8
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.1e-57 227.6 198 60.6
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.3e-55 220.7 275 45.5
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 9.0e-52 208.0 202 58.9
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 4.2e-49 199.1 252 44.0
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 8.1e-45 184.9 125 71.2
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.3e-39 167.5 121 72.7
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 4.9e-34 149.1 137 56.9
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.7e-32 143.3 152 53.3
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.8e-28 130.6 87 74.7
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 2.6e-27 126.7 83 74.7
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.1e-24 115.5 106 62.3
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-21 107.8 144 46.5
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.3e-21 107.8 155 43.9
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 9.0e-20 101.7 63 73.0
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.5e-14 83.6 44 88.6
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 6.3e-13 79.0 70 64.3
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 1.4e-12 77.8 67 56.7
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.1e-08 63.9 135 33.3


User provided reference genes

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