Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 6.6e-96 354.0 173 100.0
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 1.7e-83 312.8 172 90.7
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 2.2e-83 312.4 174 92.5
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 7.9e-65 250.8 174 75.9
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 1.4e-58 229.9 178 71.3
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 3.9e-56 221.9 173 70.5
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 1.1e-53 213.8 138 76.1
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 1.4e-53 213.4 175 64.0
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 9.0e-53 210.7 135 77.0
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 5.8e-52 208.0 122 82.0
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 2.2e-51 206.1 109 88.1
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 8.4e-51 204.1 150 71.3
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 1.1e-50 203.8 110 86.4
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 1.1e-50 203.8 134 76.9
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.4e-50 203.4 149 69.8
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.4e-50 203.4 141 73.0
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 1.9e-50 203.0 110 85.5
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 2.5e-50 202.6 129 76.7
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 2.5e-50 202.6 119 80.7
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 2.5e-50 202.6 134 73.9
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 3.2e-50 202.2 149 69.1
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.2e-50 202.2 149 69.1
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 4.2e-50 201.8 126 77.8
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 5.5e-50 201.4 156 65.4
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 7.1e-50 201.1 106 89.6
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 9.3e-50 200.7 132 77.3
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 9.3e-50 200.7 122 77.9
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 1.6e-49 199.9 145 68.3
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 2.1e-49 199.5 138 72.5
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 2.7e-49 199.1 158 68.4
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 3.5e-49 198.7 138 72.5
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 4.6e-49 198.4 167 64.1
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 6.1e-49 198.0 122 77.0
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 1.0e-48 197.2 115 79.1
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 1.0e-48 197.2 109 83.5
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 1.8e-48 196.4 107 84.1
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 3.0e-48 195.7 179 61.5
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 5.1e-48 194.9 132 75.0
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 5.1e-48 194.9 120 78.3
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 6.7e-48 194.5 124 76.6
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 6.7e-48 194.5 124 76.6
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 6.7e-48 194.5 124 76.6
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.1e-47 193.7 107 81.3
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.5e-47 193.4 130 73.1
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.5e-47 193.4 106 83.0
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.9e-47 193.0 104 85.6
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 2.5e-47 192.6 108 85.2
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 2.5e-47 192.6 187 60.4
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 2.5e-47 192.6 103 84.5
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 2.5e-47 192.6 103 84.5
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 4.3e-47 191.8 108 81.5
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 4.3e-47 191.8 171 60.8
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 5.7e-47 191.4 110 80.9
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 5.7e-47 191.4 104 83.7
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 9.7e-47 190.7 142 64.8
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 9.7e-47 190.7 104 83.7
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.6e-46 189.9 104 81.7
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 2.2e-46 189.5 171 59.6
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 2.8e-46 189.1 142 65.5
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.8e-46 189.1 127 72.4
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 3.7e-46 188.7 107 81.3
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 4.8e-46 188.3 110 79.1
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 4.8e-46 188.3 109 78.9
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 6.3e-46 188.0 142 65.5
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 8.2e-46 187.6 106 81.1
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 8.2e-46 187.6 104 82.7
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.1e-45 187.2 102 84.3
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.8e-45 186.4 103 83.5
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 2.4e-45 186.0 102 83.3
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 2.4e-45 186.0 102 83.3
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 2.4e-45 186.0 102 83.3
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 2.4e-45 186.0 130 70.8
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.4e-45 186.0 127 70.9
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 3.1e-45 185.7 142 63.4
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 3.1e-45 185.7 102 83.3
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 4.1e-45 185.3 104 79.8
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 6.9e-45 184.5 102 82.4
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 6.9e-45 184.5 102 82.4
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 6.9e-45 184.5 102 82.4
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 6.9e-45 184.5 102 82.4
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 9.0e-45 184.1 105 79.0
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 5.5e-42 174.9 150 63.3
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 4.6e-41 171.8 104 74.0
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 6.1e-41 171.4 145 64.8
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 7.9e-41 171.0 103 74.8
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 1.4e-40 170.2 109 68.8
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 4.8e-38 161.8 101 70.3
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.8e-37 159.8 138 58.0
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 6.9e-37 157.9 86 81.4
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 5.9e-36 154.8 78 87.2
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 1.0e-35 154.1 109 72.5
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 1.0e-35 154.1 141 56.7
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.7e-35 153.3 82 85.4
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 2.5e-34 149.4 75 89.3
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 2.1e-33 146.4 72 86.1
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 3.6e-33 145.6 104 64.4
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 8.8e-32 141.0 176 47.2
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 7.4e-31 137.9 149 54.4
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 5.9e-28 128.3 94 58.5
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.2e-27 126.3 100 57.0
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 5.5e-26 121.7 94 57.4
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 2.7e-25 119.4 99 62.6
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 8.0e-25 117.9 98 54.1
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 8.8e-24 114.4 95 53.7
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 1.8e-21 106.7 56 89.3
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 1.6e-20 103.6 49 87.8
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 1.6e-20 103.6 124 49.2
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 7.7e-20 101.3 51 92.2
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 1.0e-19 100.9 60 80.0
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 2.2e-19 99.8 63 73.0
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 2.2e-19 99.8 63 73.0
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 2.2e-19 99.8 63 73.0
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 2.2e-19 99.8 63 73.0
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 2.9e-19 99.4 52 86.5
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 3.8e-19 99.0 59 76.3
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 8.5e-19 97.8 52 82.7
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.1e-18 97.4 77 61.0
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 2.7e-17 92.8 51 82.4
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.7e-14 83.6 95 47.4
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-14 82.0 52 67.3
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 6.5e-11 71.6 41 80.5
Medtr5g011478 Medicago truncatula HOM05D005851 ORTHO05D007137 9.4e-10 67.8 46 78.3
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 2.1e-09 66.6 105 42.9
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 1.8e-08 63.5 41 80.5
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 1.8e-08 63.5 41 80.5
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 1.8e-08 63.5 41 80.5
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 1.8e-08 63.5 41 80.5
arahy.Tifrunner.gnm1.ann1.6D2PAS Arachis hypogaea HOM05D005851 ORTHO05D007137 8.8e-08 61.2 41 78.0
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.7e-06 57.0 40 70.0
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 8.3e-06 54.7 40 70.0
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 8.3e-06 54.7 40 70.0


User provided reference genes

Program Settings