Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 6.1e-48 193.7 92 100.0
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 1.5e-30 136.0 63 95.2
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 2.0e-27 125.6 63 85.7
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 1.1e-25 119.8 53 92.5
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 9.8e-22 106.7 63 71.4
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 1.3e-21 106.3 68 67.6
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 1.7e-21 105.9 69 68.1
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.1e-20 101.7 74 62.2
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.2e-19 99.8 71 62.0
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 3.5e-19 98.2 91 49.5
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.5e-19 98.2 54 70.4
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 3.5e-19 98.2 66 62.1
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.0e-18 96.7 54 68.5
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 1.3e-18 96.3 63 65.1
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.3e-18 96.3 56 66.1
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.3e-18 96.3 51 76.5
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.3e-18 96.3 51 76.5
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.3e-18 96.3 51 76.5
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 2.2e-18 95.5 70 58.6
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.9e-18 95.1 71 56.3
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 6.5e-18 94.0 59 64.4
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 8.5e-18 93.6 45 77.8
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 8.5e-18 93.6 78 53.8
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 1.1e-17 93.2 47 76.6
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 4.2e-17 91.3 67 55.2
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 5.5e-17 90.9 53 62.3
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 5.5e-17 90.9 68 57.4
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 5.5e-17 90.9 75 52.0
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 2.1e-16 89.0 51 64.7
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.1e-16 89.0 72 51.4
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 2.8e-16 88.6 66 54.5
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 6.1e-16 87.4 63 55.6
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 6.1e-16 87.4 63 55.6
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 8.0e-16 87.0 74 50.0
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 8.0e-16 87.0 61 55.7
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.8e-15 85.9 65 52.3
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.3e-15 85.5 61 52.5
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 3.0e-15 85.1 64 56.2
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 4.0e-15 84.7 65 55.4
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 5.2e-15 84.3 62 54.8
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 5.2e-15 84.3 68 45.6
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 1.5e-14 82.8 60 55.0
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.6e-14 82.0 61 52.5
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 3.4e-14 81.6 45 68.9
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 3.4e-14 81.6 63 46.0
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 9.8e-14 80.1 43 67.4
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.3e-13 79.7 63 50.8
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.7e-13 79.3 70 44.3
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 2.2e-13 79.0 62 48.4
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.8e-13 78.6 64 45.3
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 2.8e-13 78.6 55 49.1
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.7e-13 78.2 65 49.2
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 6.3e-13 77.4 61 49.2
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 8.3e-13 77.0 64 45.3
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 8.3e-13 77.0 65 47.7
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.1e-12 76.6 64 50.0
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 1.4e-12 76.3 55 49.1
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.4e-12 76.3 56 50.0
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 1.8e-12 75.9 43 58.1
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 2.4e-12 75.5 63 49.2
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.4e-12 75.5 65 47.7
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 3.1e-12 75.1 64 46.9
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 3.1e-12 75.1 71 42.3
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 4.1e-12 74.7 43 58.1
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 5.4e-12 74.3 68 47.1
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 1.2e-11 73.2 65 44.6
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 1.6e-11 72.8 65 44.6
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.0e-11 72.4 65 44.6
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.0e-11 72.4 65 44.6
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.0e-11 72.4 65 44.6
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.0e-11 72.4 65 43.1
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.0e-11 72.4 43 58.1
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 2.0e-11 72.4 43 58.1
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 2.7e-11 72.0 66 48.5
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 4.5e-11 71.2 67 43.3
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 4.5e-11 71.2 68 45.6
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 5.9e-11 70.9 68 45.6
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 5.9e-11 70.9 43 55.8
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 5.9e-11 70.9 68 44.1
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 7.8e-11 70.5 50 46.0
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.7e-10 69.3 69 39.1
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.3e-10 68.9 43 53.5
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 2.9e-10 68.6 49 49.0
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.9e-10 68.6 65 41.5
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.9e-10 68.6 43 53.5
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.8e-10 68.2 51 68.6
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.8e-10 68.2 43 53.5
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 3.8e-10 68.2 55 47.3
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 5.0e-10 67.8 43 51.2
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 5.0e-10 67.8 43 51.2
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 9.5e-09 63.5 42 47.6
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.8e-07 59.3 68 41.2
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 5.2e-07 57.8 46 50.0
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 8.9e-07 57.0 45 51.1
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.4e-06 55.1 44 50.0


User provided reference genes

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