Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1426.4 697 100.0
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1370.9 697 95.1
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1364.4 698 94.8
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1363.2 697 95.0
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1340.5 698 92.8
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1325.8 697 92.1
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1325.1 697 92.1
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1324.7 697 91.8
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1319.3 697 90.5
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1318.5 697 90.5
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1305.0 693 90.6
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1295.0 697 89.4
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1294.6 697 89.7
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1228.8 698 83.8
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1222.2 698 83.4
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1221.8 698 83.2
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1219.5 697 83.5
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1216.1 698 82.7
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1211.4 698 83.4
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1209.5 696 82.2
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1194.1 698 81.9
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1192.9 692 82.2
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1192.6 698 81.7
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 695 81.3
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 698 82.1
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1187.9 694 83.0
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1185.2 675 83.4
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 694 82.3
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1183.7 694 82.4
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1183.3 698 82.2
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1178.7 695 80.4
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1178.7 698 80.4
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 692 81.2
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1177.5 694 81.6
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 694 81.0
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1174.8 698 79.8
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1173.3 699 80.0
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1172.5 695 80.4
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 697 80.5
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1171.0 694 80.1
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1171.0 700 80.4
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1168.7 695 79.6
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1167.9 695 80.3
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 695 79.4
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1166.8 698 78.5
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1161.4 698 78.8
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1161.0 694 79.7
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1159.8 693 79.4
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1156.0 695 79.0
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1154.8 697 79.6
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 695 79.3
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 700 78.9
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 720 77.9
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 695 79.1
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 695 79.0
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1148.3 693 79.5
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 695 78.1
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1145.2 693 79.5
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 695 78.6
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 693 79.9
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1144.0 695 79.6
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 694 78.4
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1140.9 694 78.1
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 695 78.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 694 77.8
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1135.2 695 77.8
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1133.2 694 77.2
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 694 77.2
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 694 78.2
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1130.5 695 77.8
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 697 77.9
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 698 78.5
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1121.3 696 77.7
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1121.3 695 76.4
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1120.9 692 78.2
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1117.4 694 76.1
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1115.5 694 75.6
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1113.6 696 76.4
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1111.7 696 76.4
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1104.7 698 76.9
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1102.4 718 75.3
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1101.3 693 75.0
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 698 77.1
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1092.8 647 80.1
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1092.4 680 77.4
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1092.0 680 77.4
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1090.5 747 71.0
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1088.9 692 76.0
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1086.6 740 73.6
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1081.6 718 73.4
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1080.9 698 73.5
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1078.5 699 75.4
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1077.4 719 72.0
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 9.5e-311 1069.7 615 82.6
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 2.3e-309 1065.1 695 75.8
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 8.9e-309 1063.1 699 73.7
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 5.0e-304 1047.3 698 74.5
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.2e-300 1036.2 677 73.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 7.1e-298 1026.9 585 82.9
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.6e-294 1015.8 705 70.8
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.3e-291 1006.1 702 70.2
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 4.7e-286 987.6 695 69.4
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 5.6e-279 964.1 641 73.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 1.2e-265 919.8 539 81.4
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 6.9e-261 904.0 712 66.0
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.9e-259 897.9 581 73.8
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 9.7e-239 830.5 699 58.7
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 3.2e-234 815.5 536 74.1
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.5e-223 780.0 699 55.8
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 9.7e-223 777.3 701 56.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 9.7e-223 777.3 701 56.2
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.6e-220 770.0 703 55.8
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.0e-220 769.6 471 78.3
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 9.8e-215 750.7 706 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.7e-214 750.0 710 55.9
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.7e-187 660.2 386 80.3
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.4e-157 560.1 720 43.2
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 5.1e-147 525.8 375 69.6
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.4e-136 491.1 504 53.8
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.1e-109 401.7 248 79.4
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.5e-109 400.6 765 35.4
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 3.8e-102 376.7 816 32.1
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 8.3e-97 359.0 268 64.9
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 2.0e-95 354.4 334 55.4
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.2e-76 292.0 179 75.4
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 4.0e-75 287.0 247 61.1
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 4.0e-75 287.0 242 62.4
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 1.7e-70 271.6 184 71.7
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.8e-68 264.2 165 77.0
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.8e-67 261.5 610 33.0
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 7.3e-61 239.6 235 54.0
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 7.1e-48 196.4 127 70.9
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 2.4e-43 181.4 138 71.0
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-39 169.1 140 63.6
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.0e-35 154.1 216 43.1
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.2e-34 152.5 93 77.4
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.6e-28 132.1 76 81.6
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 6.2e-28 130.2 75 78.7
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.9e-25 121.3 84 67.9
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.2e-18 99.4 85 52.9
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.1e-16 92.8 87 56.3
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.8e-11 75.5 49 73.5
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 1.5e-10 72.4 49 67.3


User provided reference genes

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