Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g155160 Pisum sativum HOM05D005989 ORTHO05D000022 3.4e-129 464.9 224 100.0
TPR.G13740 Trifolium pratense HOM05D005989 ORTHO05D000022 3.2e-34 149.4 140 47.9
Medtr3g052720 Medicago truncatula HOM05D000001 ORTHO05D000003 3.7e-30 136.0 226 32.7
TPR.G15449 Trifolium pratense HOM05D005989 ORTHO05D000022 1.4e-26 124.0 238 29.8
Psat0s1775g0320 Pisum sativum HOM05D005989 ORTHO05D000022 2.3e-24 116.7 235 31.9
RcHm_v2.0_Chr2g0167951 Rosa chinensis HOM05D005989 ORTHO05D000022 3.3e-23 112.8 138 38.4
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 4.3e-23 112.5 138 40.6
RcHm_v2.0_Chr1g0352021 Rosa chinensis HOM05D005989 ORTHO05D000022 1.3e-22 110.9 138 36.2
RcHm_v2.0_Chr6g0264461 Rosa chinensis HOM05D005989 ORTHO05D000022 1.3e-22 110.9 138 36.2
TPR.G23861 Trifolium pratense HOM05D005989 ORTHO05D000022 2.8e-22 109.8 110 42.7
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 3.7e-22 109.4 138 40.6
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-21 107.5 140 37.9
Lalb_Chr21g0306271 Lupinus albus HOM05D005989 ORTHO05D000022 4.1e-21 105.9 138 37.7
MD02G1050700 Malus domestica HOM05D000155 ORTHO05D000022 4.1e-21 105.9 138 41.3
Lalb_Chr18g0052711 Lupinus albus HOM05D005989 ORTHO05D000022 5.3e-21 105.5 105 45.7
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 5.3e-21 105.5 141 39.0
Atru.chr5.427 Acer truncatum HOM05D000155 ORTHO05D000022 1.2e-20 104.4 142 35.9
RcHm_v2.0_Chr7g0185631 Rosa chinensis HOM05D000155 ORTHO05D000022 1.5e-20 104.0 140 36.4
MD13G1019000 Malus domestica HOM05D000155 ORTHO05D000022 2.6e-20 103.2 138 39.9
RcHm_v2.0_Chr2g0133661 Rosa chinensis HOM05D000155 ORTHO05D000022 2.6e-20 103.2 136 39.0
RcHm_v2.0_Chr6g0278601 Rosa chinensis HOM05D000003 ORTHO05D000004 2.6e-20 103.2 138 37.7
TPR.G37438 Trifolium pratense HOM05D005989 ORTHO05D000022 3.4e-20 102.8 126 37.3
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 7.6e-20 101.7 140 37.1
Atru.chr2.2454 Acer truncatum HOM05D005989 ORTHO05D000022 7.6e-20 101.7 140 38.6
FvH4_6g09211 Fragaria vesca HOM05D000003 ORTHO05D000651 1.3e-19 100.9 137 38.7
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 1.7e-19 100.5 110 45.5
Atru.chr10.504 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-19 100.1 140 37.1
Atru.chr2.1816 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-19 100.1 139 37.4
Atru.chr1.1636 Acer truncatum HOM05D005989 ORTHO05D000022 2.9e-19 99.8 213 31.5
Atru.chr2.2552 Acer truncatum HOM05D005989 ORTHO05D000022 6.5e-19 98.6 140 35.7
Prupe.4G283800 Prunus persica HOM05D005989 ORTHO05D000651 6.5e-19 98.6 132 37.1
Glyma.13G358333 Glycine max HOM05D005989 ORTHO05D000022 1.4e-18 97.4 94 45.7
RcHm_v2.0_Chr4g0393351 Rosa chinensis HOM05D000155 ORTHO05D000022 1.9e-18 97.1 143 37.1
Lalb_Chr07g0188801 Lupinus albus HOM05D005989 ORTHO05D000022 2.5e-18 96.7 138 37.7
Psat1g101960 Pisum sativum HOM05D000003 ORTHO05D000007 2.5e-18 96.7 138 34.8
TPR.G16745 Trifolium pratense HOM05D005989 ORTHO05D000022 3.2e-18 96.3 116 37.9
TPR.G3914 Trifolium pratense HOM05D005989 ORTHO05D000022 3.2e-18 96.3 111 42.3
Psat4g016640 Pisum sativum HOM05D005989 ORTHO05D000022 7.2e-18 95.1 138 34.1
RcHm_v2.0_Chr6g0259301 Rosa chinensis HOM05D000155 ORTHO05D000022 7.2e-18 95.1 139 36.7
RcHm_v2.0_Chr4g0395061 Rosa chinensis HOM05D005989 ORTHO05D000022 9.3e-18 94.7 103 41.7
RcHm_v2.0_Chr7g0206171 Rosa chinensis HOM05D005989 ORTHO05D000022 1.2e-17 94.4 138 35.5
Lalb_Chr08g0232201 Lupinus albus HOM05D005989 ORTHO05D000022 2.1e-17 93.6 75 53.3
RcHm_v2.0_Chr2g0120021 Rosa chinensis HOM05D005989 ORTHO05D000022 2.1e-17 93.6 138 34.8
Atru.chr3.1839 Acer truncatum HOM05D005989 ORTHO05D000022 3.6e-17 92.8 139 35.3
Prupe.1G484600 Prunus persica HOM05D005989 ORTHO05D000022 4.6e-17 92.4 122 39.3
RcHm_v2.0_Chr3g0462451 Rosa chinensis HOM05D005989 ORTHO05D000022 4.6e-17 92.4 140 35.0
RcHm_v2.0_Chr1g0316991 Rosa chinensis HOM05D005989 ORTHO05D000022 6.1e-17 92.0 138 34.1
RcHm_v2.0_Chr3g0465511 Rosa chinensis HOM05D000155 ORTHO05D000022 6.1e-17 92.0 110 40.0
Psat5g220480 Pisum sativum HOM05D015237 ORTHO05D000022 7.9e-17 91.7 174 28.7
RcHm_v2.0_Chr3g0459251 Rosa chinensis HOM05D005989 ORTHO05D000022 7.9e-17 91.7 103 39.8
RcHm_v2.0_Chr3g0472791 Rosa chinensis HOM05D000155 ORTHO05D000022 7.9e-17 91.7 108 39.8
RcHm_v2.0_Chr6g0263381 Rosa chinensis HOM05D000155 ORTHO05D000022 7.9e-17 91.7 136 36.8
RcHm_v2.0_Chr7g0184971 Rosa chinensis HOM05D005989 ORTHO05D000022 7.9e-17 91.7 104 40.4
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 1.0e-16 91.3 140 35.7
RcHm_v2.0_Chr4g0417481 Rosa chinensis HOM05D005989 ORTHO05D000022 1.8e-16 90.5 135 32.6
Medtr8g479410 Medicago truncatula HOM05D005989 ORTHO05D000022 2.3e-16 90.1 78 50.0
TPR.G6692 Trifolium pratense HOM05D005989 ORTHO05D000022 3.9e-16 89.4 111 36.9
RcHm_v2.0_Chr5g0077831 Rosa chinensis HOM05D005989 ORTHO05D011902 6.7e-16 88.6 206 30.1
RcHm_v2.0_Chr6g0251621 Rosa chinensis HOM05D000155 ORTHO05D000022 6.7e-16 88.6 110 36.4
TPR.G40388 Trifolium pratense HOM05D005989 ORTHO05D000022 1.5e-15 87.4 94 44.7
FvH4_6g51131 Fragaria vesca HOM05D000155 ORTHO05D000022 3.3e-15 86.3 107 37.4
Lalb_Chr23g0276181 Lupinus albus HOM05D005989 ORTHO05D000022 3.3e-15 86.3 125 36.0
Medtr1g083630 Medicago truncatula HOM05D000008 ORTHO05D000005 3.3e-15 86.3 77 49.4
TPR.G18660 Trifolium pratense HOM05D005989 ORTHO05D000022 5.7e-15 85.5 138 32.6
PSO063G2465 Papaver somniferum HOM05D005989 ORTHO05D000022 1.3e-14 84.3 110 37.3
TPR.G36653 Trifolium pratense HOM05D000003 ORTHO05D000006 1.3e-14 84.3 92 44.6
Atru.chr3.1897 Acer truncatum HOM05D000003 ORTHO05D000651 1.6e-14 84.0 140 34.3
FvH4_3g39131 Fragaria vesca HOM05D005989 ORTHO05D000022 1.6e-14 84.0 113 36.3
Medtr8g470880 Medicago truncatula HOM05D000003 ORTHO05D000006 1.1e-13 81.3 112 38.4
RcHm_v2.0_Chr1g0357231 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-13 81.3 181 28.7
Medtr7g035440 Medicago truncatula HOM05D005989 ORTHO05D000022 1.4e-13 80.9 120 34.2
Atru.chr9.329 Acer truncatum HOM05D005989 ORTHO05D000022 1.8e-13 80.5 105 38.1
Atru.chr9.192 Acer truncatum HOM05D005989 ORTHO05D000022 2.4e-13 80.1 117 35.9
Atru.chr7.890 Acer truncatum HOM05D005989 ORTHO05D000022 5.3e-13 79.0 120 38.3
Lalb_Chr02g0160271 Lupinus albus HOM05D005989 ORTHO05D000022 1.5e-12 77.4 86 41.9
PSO541G4268 Papaver somniferum HOM05D005989 ORTHO05D000022 2.0e-12 77.0 110 33.6
PSO832G3439 Papaver somniferum HOM05D005989 ORTHO05D000022 3.4e-12 76.3 107 33.6
RcHm_v2.0_Chr6g0299951 Rosa chinensis HOM05D005989 ORTHO05D000022 4.5e-12 75.9 88 37.5
Lalb_Chr06g0169621 Lupinus albus HOM05D005989 ORTHO05D000022 1.0e-11 74.7 79 43.0
Medtr3g026170 Medicago truncatula HOM05D009351 ORTHO05D011822 1.3e-11 74.3 140 30.0
Medtr4g053908 Medicago truncatula HOM05D009299 ORTHO05D000022 1.3e-11 74.3 70 50.0
RcHm_v2.0_Chr5g0016091 Rosa chinensis HOM05D005989 ORTHO05D020750 1.3e-11 74.3 112 37.5
Phvul.004G137000 Phaseolus vulgaris HOM05D005989 ORTHO05D000022 2.2e-11 73.6 90 35.6
Nitab4.5_0001289g0120 Nicotiana tabacum HOM05D000155 ORTHO05D000022 2.9e-11 73.2 161 28.6
TPR.G25752 Trifolium pratense HOM05D009299 ORTHO05D000022 2.9e-11 73.2 178 25.8
Lalb_Chr06g0160781 Lupinus albus HOM05D005989 ORTHO05D000022 3.8e-11 72.8 71 46.5
Medtr7g059380 Medicago truncatula HOM05D005989 ORTHO05D000022 3.8e-11 72.8 80 45.0
Medtr0070s0030 Medicago truncatula HOM05D015419 ORTHO05D011822 6.5e-11 72.0 104 36.5
Medtr2g022360 Medicago truncatula HOM05D005989 ORTHO05D000022 6.5e-11 72.0 52 57.7
Phvul.005G063000 Phaseolus vulgaris HOM05D005989 ORTHO05D000022 8.5e-11 71.6 170 33.5
Atru.chr5.433 Acer truncatum HOM05D005989 ORTHO05D000022 1.1e-10 71.2 93 37.6
Medtr7g031765 Medicago truncatula HOM05D009351 ORTHO05D011822 1.1e-10 71.2 90 41.1
Medtr6g061220 Medicago truncatula HOM05D005989 ORTHO05D000022 3.2e-10 69.7 65 46.2
Medtr0126s0110 Medicago truncatula HOM05D060367 ORTHO05D000022 9.4e-10 68.2 105 38.1
Medtr2g010070 Medicago truncatula HOM05D005989 ORTHO05D000022 9.4e-10 68.2 103 32.0
Psat4g109600 Pisum sativum HOM05D000351 ORTHO05D000250 9.4e-10 68.2 100 32.0
Medtr6g075360 Medicago truncatula HOM05D009351 ORTHO05D011822 1.2e-09 67.8 81 44.4
Psat0s1289g0120 Pisum sativum HOM05D009299 ORTHO05D000022 1.2e-09 67.8 72 41.7
Lalb_Chr02g0151681 Lupinus albus HOM05D000155 ORTHO05D000022 2.1e-09 67.0 77 37.7
Atru.chr11.245 Acer truncatum HOM05D005989 ORTHO05D000022 2.7e-09 66.6 104 34.6
Medtr8g076430 Medicago truncatula HOM05D005989 ORTHO05D000022 2.7e-09 66.6 56 48.2
MBI04_g19010_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.9e-09 65.1 140 30.7
FvH4_5g27541 Fragaria vesca HOM05D005989 ORTHO05D000022 1.4e-08 64.3 107 37.4
Medtr6g038610 Medicago truncatula HOM05D005989 ORTHO05D000022 1.8e-08 63.9 59 44.1
RcHm_v2.0_Chr3g0454631 Rosa chinensis HOM05D002340 ORTHO05D003624 1.8e-08 63.9 73 45.2
PGSC0003DMG400020870 Solanum tuberosum HOM05D000155 ORTHO05D000022 1.8e-08 63.9 140 29.3
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 2.3e-08 63.5 115 25.2
RcHm_v2.0_Chr2g0154361 Rosa chinensis HOM05D005989 ORTHO05D000022 6.7e-08 62.0 86 32.6
Aqoxy1G02708 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 8.8e-08 61.6 75 42.7
Phvul.010G021300 Phaseolus vulgaris HOM05D005989 ORTHO05D000022 8.8e-08 61.6 72 38.9
TPR.G36747 Trifolium pratense HOM05D000155 ORTHO05D000022 8.8e-08 61.6 141 29.1
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 61.2 149 26.8
Atru.chr3.2099 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 61.2 143 32.2
Medtr4g031410 Medicago truncatula HOM05D001538 ORTHO05D000007 1.1e-07 61.2 100 36.0
Medtr4g031755 Medicago truncatula HOM05D001538 ORTHO05D000007 1.1e-07 61.2 100 36.0
Medtr6g071310 Medicago truncatula HOM05D005989 ORTHO05D000022 1.1e-07 61.2 75 41.3
Nitab4.5_0011501g0010 Nicotiana tabacum HOM05D000155 ORTHO05D000022 1.1e-07 61.2 100 34.0
SEGI_14515 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 1.1e-07 61.2 127 26.8
Medtr6g055090 Medicago truncatula HOM05D005989 ORTHO05D000022 1.5e-07 60.8 99 34.3
BcaC09g51229 Brassica carinata HOM05D000155 ORTHO05D000022 2.6e-07 60.1 128 29.7
A01p12730 Brassica napus HOM05D000155 ORTHO05D000022 2.6e-07 60.1 128 29.7
C01p15320 Brassica napus HOM05D000155 ORTHO05D000022 2.6e-07 60.1 128 29.7
BolC1t01486H Brassica oleracea HOM05D000155 ORTHO05D000022 2.6e-07 60.1 128 29.7
BraA01t01216Z Brassica rapa HOM05D000155 ORTHO05D000022 2.6e-07 60.1 128 29.7
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 2.6e-07 60.1 136 29.4
Psat0s1928g0080 Pisum sativum HOM05D009299 ORTHO05D000022 3.3e-07 59.7 73 39.7
RcHm_v2.0_Chr7g0237631 Rosa chinensis HOM05D005989 ORTHO05D000022 3.3e-07 59.7 81 33.3
PGSC0003DMG400005085 Solanum tuberosum HOM05D000155 ORTHO05D000022 3.3e-07 59.7 140 25.7
Medtr3g110500 Medicago truncatula HOM05D005989 ORTHO05D000022 4.4e-07 59.3 105 28.6
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 7.4e-07 58.5 110 34.5
Medtr0553s0050 Medicago truncatula HOM05D009351 ORTHO05D011822 7.4e-07 58.5 68 45.6
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.4e-07 58.5 144 28.5
Atru.chr4.172 Acer truncatum HOM05D000003 ORTHO05D000004 9.7e-07 58.2 141 27.7
AL7G32660 Arabidopsis lyrata HOM05D000155 ORTHO05D000022 9.7e-07 58.2 112 29.5
Medtr1g074290 Medicago truncatula HOM05D000124 ORTHO05D000056 9.7e-07 58.2 91 35.2
PSO541G0560 Papaver somniferum HOM05D000045 ORTHO05D000067 9.7e-07 58.2 122 30.3
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 9.7e-07 58.2 74 41.9
Sp7g19540 Schrenkiella parvula HOM05D000155 ORTHO05D000022 9.7e-07 58.2 124 27.4
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.8 143 29.4
Atru.chr3.2572 Acer truncatum HOM05D000155 ORTHO05D000022 1.3e-06 57.8 139 27.3
FvH4_2g01462 Fragaria vesca HOM05D005989 ORTHO05D000022 1.3e-06 57.8 137 29.2
Medtr7g057410 Medicago truncatula HOM05D001129 ORTHO05D012124 1.3e-06 57.8 187 23.5
Nitab4.5_0000008g0280 Nicotiana tabacum HOM05D000155 ORTHO05D000022 1.3e-06 57.8 105 27.6
Psat5g266280 Pisum sativum HOM05D015237 ORTHO05D016348 1.3e-06 57.8 140 27.9
COL.COLO4_31628 Corchorus olitorius HOM05D000774 ORTHO05D000602 1.7e-06 57.4 158 29.1
FvH4_3g03751 Fragaria vesca HOM05D000155 ORTHO05D000022 1.7e-06 57.4 175 28.6
PSO675G6965 Papaver somniferum HOM05D000045 ORTHO05D000067 1.7e-06 57.4 122 30.3
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 1.7e-06 57.4 156 24.4
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-06 57.0 126 33.3
Aqoxy4G01096 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 2.2e-06 57.0 92 34.8
QL05p080949 Quercus lobata HOM05D000155 ORTHO05D000022 2.2e-06 57.0 127 30.7
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 2.8e-06 56.6 147 27.9
CARHR228090 Cardamine hirsuta HOM05D000155 ORTHO05D000022 3.7e-06 56.2 112 30.4
Lj1P1214T60 Lonicera japonica HOM05D000155 ORTHO05D000022 3.7e-06 56.2 128 24.2
Medtr1g110910 Medicago truncatula HOM05D005989 ORTHO05D000022 3.7e-06 56.2 48 45.8
Medtr1g059640 Medicago truncatula HOM05D005989 ORTHO05D000022 4.8e-06 55.8 110 32.7
Medtr2g033485 Medicago truncatula HOM05D005989 ORTHO05D000022 4.8e-06 55.8 49 49.0
Medtr3g092860 Medicago truncatula HOM05D005989 ORTHO05D000022 4.8e-06 55.8 40 52.5
Nitab4.5_0000258g0090 Nicotiana tabacum HOM05D000155 ORTHO05D000022 4.8e-06 55.8 142 26.8
Aqoxy4G02372 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.3e-06 55.5 107 26.2
Medtr2g062550 Medicago truncatula HOM05D002545 ORTHO05D002335 6.3e-06 55.5 70 40.0
Medtr8g069665 Medicago truncatula HOM05D000111 ORTHO05D000022 6.3e-06 55.5 90 35.6
Atru.chr3.2200 Acer truncatum HOM05D000003 ORTHO05D000022 8.2e-06 55.1 141 28.4
Sopen04g008670 Solanum pennellii HOM05D000155 ORTHO05D000022 8.2e-06 55.1 117 25.6


User provided reference genes

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