Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g153960 Pisum sativum HOM05D000102 ORTHO05D324175 8.5e-99 363.6 177 100.0
Psat2g154000 Pisum sativum HOM05D000102 ORTHO05D000138 1.7e-14 83.6 145 41.4
Lj2g0000282 Lotus japonicus HOM05D000102 ORTHO05D000138 3.9e-11 72.4 145 35.9
Ca_25817_v3 Cicer arietinum L. HOM05D000102 ORTHO05D000138 8.7e-11 71.2 145 35.9
Medtr5g022350 Medicago truncatula HOM05D000102 ORTHO05D000138 1.5e-10 70.5 145 35.2
Migut.L00673 Erythranthe guttata HOM05D000102 ORTHO05D000138 1.9e-10 70.1 144 35.4
Migut.L00700 Erythranthe guttata HOM05D000102 ORTHO05D000138 1.9e-10 70.1 146 36.3
TPR.G31337 Trifolium pratense HOM05D000102 ORTHO05D000138 9.7e-10 67.8 145 35.2
VMungo0251G1956 Vigna mungo HOM05D000102 ORTHO05D000138 2.2e-09 66.6 117 36.8
Lalb_Chr09g0321671 Lupinus albus HOM05D000102 ORTHO05D000138 2.8e-09 66.2 113 38.9
TPR.G39230 Trifolium pratense HOM05D000102 ORTHO05D000138 3.7e-09 65.9 127 34.6
Psat0s3142g0040 Pisum sativum HOM05D000102 ORTHO05D000138 4.8e-09 65.5 145 34.5
Medtr8g075510 Medicago truncatula HOM05D000102 ORTHO05D000138 6.3e-09 65.1 145 35.2
Glyma.11G077800 Glycine max HOM05D000102 ORTHO05D000138 1.1e-08 64.3 145 33.8
Thecc.01G016900 Theobroma cacao HOM05D000102 ORTHO05D000138 1.1e-08 64.3 145 33.1
CANSAT25G2621 Cannabis sativa HOM05D000102 ORTHO05D000138 1.4e-08 63.9 145 33.8
CANSAT25G2747 Cannabis sativa HOM05D000102 ORTHO05D000138 1.4e-08 63.9 145 33.8
COL.COLO4_22440 Corchorus olitorius HOM05D000102 ORTHO05D000138 1.8e-08 63.5 145 33.1
Phvul.003G263400 Phaseolus vulgaris HOM05D000102 ORTHO05D000138 2.4e-08 63.2 117 36.8
Gohir.D12G059000 Gossypium hirsutum HOM05D000102 ORTHO05D000138 4.1e-08 62.4 145 33.1
EL10Ac9g21407 Beta vulgaris HOM05D000102 ORTHO05D000138 5.3e-08 62.0 145 34.5
Glyma.02G047400 Glycine max HOM05D000102 ORTHO05D000138 5.3e-08 62.0 117 35.9
Glyma.16G126900 Glycine max HOM05D000102 ORTHO05D000138 5.3e-08 62.0 117 35.0
SalBow5G4004 Salvia bowleyana HOM05D000102 ORTHO05D000138 5.3e-08 62.0 144 32.6
Actinidia17435 Actinidia chinensis HOM05D000102 ORTHO05D000138 6.9e-08 61.6 116 37.1
PGR142G2591 Punica granatum HOM05D000102 ORTHO05D000138 6.9e-08 61.6 145 33.1
Gohir.A12G059000 Gossypium hirsutum HOM05D000102 ORTHO05D000138 9.0e-08 61.2 145 32.4
Gorai.008G062300 Gossypium raimondii HOM05D000102 ORTHO05D000138 9.0e-08 61.2 145 32.4
Lalb_Chr16g0391321 Lupinus albus HOM05D000102 ORTHO05D000138 9.0e-08 61.2 118 36.4
Actinidia22968 Actinidia chinensis HOM05D000102 ORTHO05D000138 1.2e-07 60.8 147 31.3
Ca_22384_v3 Cicer arietinum L. HOM05D000102 ORTHO05D000138 1.2e-07 60.8 145 33.1
TWI09G1265 Tripterygium wilfordii HOM05D000102 ORTHO05D000138 1.2e-07 60.8 147 32.7
Ca_19050_v3 Cicer arietinum L. HOM05D000102 ORTHO05D000138 1.5e-07 60.5 145 31.7
Glyma.01G165400 Glycine max HOM05D000102 ORTHO05D000138 1.5e-07 60.5 145 32.4
arahy.Tifrunner.gnm1.ann1.BZ7TGJ Arachis hypogaea HOM05D000102 ORTHO05D000138 2.0e-07 60.1 145 33.1
arahy.Tifrunner.gnm1.ann1.RNT4RI Arachis hypogaea HOM05D000102 ORTHO05D000138 2.0e-07 60.1 145 33.1
Cfa006982 Carpinus fangiana HOM05D000102 ORTHO05D000138 2.0e-07 60.1 145 30.3
Medtr4g073720 Medicago truncatula HOM05D000102 ORTHO05D000138 2.0e-07 60.1 145 31.0
Sabra05G0092500 Salix brachista HOM05D000102 ORTHO05D000138 2.0e-07 60.1 145 31.7
Duzib264G0497 Durio zibethinus HOM05D000102 ORTHO05D000138 2.6e-07 59.7 145 32.4
Nitab4.5_0000864g0130 Nicotiana tabacum HOM05D000102 ORTHO05D000138 2.6e-07 59.7 134 33.6
Psat7g173000 Pisum sativum HOM05D000102 ORTHO05D000138 2.6e-07 59.7 145 31.0
Rhsim10G0211200 Rhododendron simsii HOM05D000102 ORTHO05D000138 2.6e-07 59.7 145 33.1
arahy.Tifrunner.gnm1.ann1.28ZKUT Arachis hypogaea HOM05D000102 ORTHO05D000138 3.4e-07 59.3 112 33.9
arahy.Tifrunner.gnm1.ann1.H5PBDQ Arachis hypogaea HOM05D000102 ORTHO05D000138 3.4e-07 59.3 112 33.9
arahy.Tifrunner.gnm1.ann1.M9H6W4 Arachis hypogaea HOM05D000102 ORTHO05D000138 3.4e-07 59.3 117 36.8
CSS0009648 Camellia sinensis var. sinensis HOM05D000102 ORTHO05D000138 3.4e-07 59.3 146 32.2
CSS0019208 Camellia sinensis var. sinensis HOM05D000102 ORTHO05D000138 3.4e-07 59.3 146 32.2
Sed0001085 Sechium edule HOM05D000102 ORTHO05D000138 3.4e-07 59.3 145 31.7
TWI73G1288 Tripterygium wilfordii HOM05D000102 ORTHO05D000138 3.4e-07 59.3 145 31.7
arahy.Tifrunner.gnm1.ann1.VNN4XC Arachis hypogaea HOM05D000102 ORTHO05D000138 4.5e-07 58.9 120 36.7
Cfa005220 Carpinus fangiana HOM05D000102 ORTHO05D000138 4.5e-07 58.9 147 32.7
Phvul.011G034200 Phaseolus vulgaris HOM05D000102 ORTHO05D000138 4.5e-07 58.9 145 32.4
VMungo1127G0813 Vigna mungo HOM05D000102 ORTHO05D000138 4.5e-07 58.9 145 32.4
CANSAT25G2370 Cannabis sativa HOM05D000102 ORTHO05D000138 5.9e-07 58.5 145 33.1
TAR628G0058 Trochodendron aralioides HOM05D000102 ORTHO05D000138 5.9e-07 58.5 108 36.1
AT4G24180 Arabidopsis thaliana HOM05D000102 ORTHO05D000138 7.7e-07 58.2 154 30.5
FAN23G2142 Fragaria x ananassa HOM05D000102 ORTHO05D000138 7.7e-07 58.2 149 30.9
Gohir.D02G225600 Gossypium hirsutum HOM05D000102 ORTHO05D000138 7.7e-07 58.2 146 30.8
Hma1.2p1_0258F.1_g104060 Hydrangea macrophylla HOM05D000102 ORTHO05D000138 7.7e-07 58.2 145 31.0
Peaxi162Scf00328g00826 Petunia axillaris HOM05D000102 ORTHO05D000138 7.7e-07 58.2 113 34.5
Sc03g0003610 Simmondsia chinensis HOM05D000102 ORTHO05D000138 7.7e-07 58.2 147 31.3
AL7G29100 Arabidopsis lyrata HOM05D000102 ORTHO05D000138 1.0e-06 57.8 154 29.2
Haze_02164 Corylus avellana HOM05D000102 ORTHO05D000138 1.0e-06 57.8 147 32.0
FAN26G1652 Fragaria x ananassa HOM05D000102 ORTHO05D000138 1.0e-06 57.8 148 31.1
HanXRQChr11g0353451 Helianthus annuus HOM05D000102 ORTHO05D000138 1.0e-06 57.8 147 34.0
FAN28G2782 Fragaria x ananassa HOM05D000102 ORTHO05D000138 1.3e-06 57.4 148 31.1
RcHm_v2.0_Chr2g0099291 Rosa chinensis HOM05D000102 ORTHO05D000138 1.3e-06 57.4 145 32.4
FAN19G2153 Fragaria x ananassa HOM05D000102 ORTHO05D000138 1.7e-06 57.0 148 31.1
Glyma.12G031200 Glycine max HOM05D000102 ORTHO05D000138 1.7e-06 57.0 145 31.7
Prupe.7G169500 Prunus persica HOM05D000102 ORTHO05D000138 1.7e-06 57.0 145 31.0
FvH4_1g11710 Fragaria vesca HOM05D000102 ORTHO05D000138 2.2e-06 56.6 148 31.1
TAR376G0203 Trochodendron aralioides HOM05D000102 ORTHO05D000138 2.2e-06 56.6 145 31.7
Carub.0007s1691 Capsella rubella HOM05D000102 ORTHO05D000138 2.9e-06 56.2 153 30.1
A07p40670 Brassica napus HOM05D000102 ORTHO05D000138 3.8e-06 55.8 51 54.9
BraA07t31611Z Brassica rapa HOM05D000102 ORTHO05D000138 3.8e-06 55.8 51 54.9
SalBow1G5036 Salvia bowleyana HOM05D000102 ORTHO05D000138 3.8e-06 55.8 111 36.0
CDE05G0373 Ceratophyllum demersum HOM05D000102 ORTHO05D000138 5.0e-06 55.5 146 31.5
Atru.chr5.3286 Acer truncatum HOM05D000102 ORTHO05D000138 6.5e-06 55.1 145 31.7
Aa31LG1G14690 Aethionema arabicum HOM05D000102 ORTHO05D000138 6.5e-06 55.1 145 29.7
Gohir.D11G181700 Gossypium hirsutum HOM05D000102 ORTHO05D000138 6.5e-06 55.1 145 31.7
Gorai.007G193400 Gossypium raimondii HOM05D000102 ORTHO05D000138 6.5e-06 55.1 145 31.7
Lalb_Chr01g0001751 Lupinus albus HOM05D000102 ORTHO05D000138 6.5e-06 55.1 145 31.0
ECA246G2507 Erigeron canadensis HOM05D000102 ORTHO05D000138 8.5e-06 54.7 147 29.3
Lsat_1_v5_gn_4_73821 Lactuca sativa HOM05D000102 ORTHO05D000138 8.5e-06 54.7 145 31.0
Potri.004G173200 Populus trichocarpa HOM05D000102 ORTHO05D000138 8.5e-06 54.7 147 32.7
Sabra04G0115200 Salix brachista HOM05D000102 ORTHO05D000138 8.5e-06 54.7 145 31.7


User provided reference genes

Program Settings