Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 2.6e-253 878.2 441 100.0
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 3.6e-239 831.2 437 94.7
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.2e-234 816.2 444 93.0
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 4.7e-231 804.3 447 91.3
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 8.9e-206 720.3 444 84.2
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 7.6e-205 717.2 450 82.7
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 7.6e-205 717.2 450 82.7
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 7.6e-205 717.2 440 83.2
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 6.0e-202 707.6 444 82.0
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 5.1e-201 704.5 447 81.0
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.6e-199 699.5 441 80.3
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 8.1e-199 697.2 444 82.0
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 1.4e-198 696.4 441 80.7
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 2.2e-196 689.1 450 78.9
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 6.4e-196 687.6 388 87.6
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.9e-195 686.0 388 87.1
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 3.2e-195 685.3 390 87.2
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.2e-194 683.3 397 84.6
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 4.6e-194 681.4 449 78.0
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.3e-193 679.9 397 85.1
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 3.0e-193 678.7 429 80.2
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 3.0e-193 678.7 455 76.9
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 6.6e-193 677.6 421 82.2
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.1e-192 676.8 416 82.0
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 1.5e-192 676.4 402 83.8
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 2.5e-192 675.6 455 76.7
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 4.3e-192 674.9 388 85.6
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.6e-192 674.5 446 78.3
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 7.3e-192 674.1 431 80.3
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 9.6e-192 673.7 446 77.8
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 1.6e-191 672.9 455 76.7
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 1.6e-191 672.9 390 84.6
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 1.6e-191 672.9 439 77.7
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.6e-191 672.9 446 77.8
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.8e-191 671.4 433 79.0
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 8.1e-191 670.6 453 76.2
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 8.1e-191 670.6 446 78.0
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 8.1e-191 670.6 434 79.0
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 1.8e-190 669.5 452 77.0
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.1e-190 668.7 446 77.8
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 4.0e-190 668.3 384 84.6
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.0e-190 668.3 453 77.7
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 1.2e-189 666.8 444 75.9
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 1.5e-189 666.4 376 86.4
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 2.0e-189 666.0 444 76.4
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 2.0e-189 666.0 408 80.4
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 2.6e-189 665.6 449 76.6
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.6e-189 665.6 463 74.5
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.4e-189 665.2 378 86.2
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 3.4e-189 665.2 409 81.9
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 3.4e-189 665.2 412 80.6
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 3.4e-189 665.2 450 75.8
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 3.4e-189 665.2 451 76.3
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 4.5e-189 664.8 459 76.0
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 4.5e-189 664.8 457 75.9
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 9.9e-189 663.7 451 76.1
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.3e-188 663.3 384 84.1
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.7e-188 662.9 453 76.4
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 2.2e-188 662.5 443 77.0
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 3.8e-188 661.8 450 76.2
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.1e-187 660.2 435 77.0
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 4.2e-187 658.3 447 75.2
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 7.1e-187 657.5 452 75.0
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 9.3e-187 657.1 460 75.0
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.2e-186 656.8 383 82.5
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 2.7e-186 655.6 444 76.8
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 3.5e-186 655.2 450 75.8
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 4.6e-186 654.8 370 85.4
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.0e-185 653.7 448 76.6
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 3.9e-185 651.7 446 76.0
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 5.1e-185 651.4 446 75.3
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 5.1e-185 651.4 446 75.8
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 6.7e-185 651.0 453 74.8
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 8.7e-185 650.6 448 73.7
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 1.5e-184 649.8 447 76.1
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 1.5e-184 649.8 447 76.1
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 1.5e-184 649.8 446 74.7
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 1.5e-184 649.8 397 79.3
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 1.9e-184 649.4 449 74.8
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 2.5e-184 649.0 386 81.1
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.5e-184 649.0 386 80.8
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 3.3e-184 648.7 397 79.3
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 4.3e-184 648.3 447 76.5
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 5.6e-184 647.9 382 81.9
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.3e-183 646.7 386 80.6
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.8e-183 645.6 395 82.0
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 2.8e-183 645.6 384 82.6
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.8e-183 644.8 378 84.9
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 6.2e-183 644.4 511 67.5
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 8.1e-183 644.0 379 82.8
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.8e-182 642.9 398 81.4
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 1.8e-182 642.9 452 74.3
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 3.1e-182 642.1 377 83.3
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 4.0e-182 641.7 384 80.7
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 3.4e-181 638.6 385 81.8
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 4.5e-181 638.3 389 81.0
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 7.6e-181 637.5 366 84.2
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 4.2e-179 631.7 462 71.6
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.5e-178 628.6 423 76.8
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 3.3e-176 622.1 384 77.6
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 2.1e-175 619.4 384 77.3
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.1e-171 607.1 366 78.7
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 6.0e-170 601.3 328 90.9
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 1.3e-169 600.1 386 74.9
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 2.3e-169 599.4 363 78.5
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 5.1e-169 598.2 386 74.1
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.7e-164 583.2 447 70.5
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 1.4e-158 563.5 407 72.2
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 1.2e-157 560.5 404 70.5
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.4e-155 553.5 398 69.6
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.4e-153 547.0 445 67.4
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 5.7e-152 541.6 427 69.3
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.8e-148 528.9 287 89.9
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 5.2e-145 518.5 502 58.2
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.1e-144 517.3 287 86.1
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.6e-144 516.2 362 69.1
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 1.7e-140 503.4 372 64.2
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 5.0e-132 475.3 294 82.0
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 1.9e-131 473.4 280 84.3
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 2.5e-131 473.0 364 63.5
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.2e-131 472.6 374 67.4
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.5e-123 445.3 280 77.5
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.2e-117 427.6 233 89.7
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 7.0e-110 401.7 449 53.9
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.7e-109 399.8 314 65.0
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.5e-99 366.7 224 78.1
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 5.8e-88 328.9 256 68.0
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 9.0e-81 305.1 273 62.6
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 6.4e-79 298.9 318 47.5
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 3.5e-77 293.1 265 57.0
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 1.3e-74 284.6 246 61.4
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 6.0e-69 265.8 355 44.2
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 1.6e-66 257.7 161 78.3
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 4.1e-57 226.5 142 78.2
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 1.4e-54 218.0 339 41.6
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 1.3e-50 204.9 202 57.9
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 6.5e-47 192.6 184 59.8
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.5e-43 181.4 113 75.2
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 4.4e-27 126.7 137 55.5
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 4.4e-27 126.7 137 55.5
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.3e-26 125.2 83 69.9
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.3e-26 125.2 83 69.9
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 6.3e-26 122.9 77 75.3
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 9.4e-22 109.0 73 72.6
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 2.3e-20 104.4 113 51.3
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.4e-19 100.5 121 48.8
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.2e-18 97.8 69 65.2
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 4.4e-11 73.6 56 67.9
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 5.0e-07 60.1 110 40.0


User provided reference genes

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