Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 2.5e-111 405.6 224 100.0
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.5e-84 316.6 200 88.0
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 9.5e-79 297.4 200 83.0
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 8.9e-77 290.8 193 83.4
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.4e-74 283.5 193 82.4
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 4.1e-74 282.0 200 81.0
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 2.7e-73 279.3 193 81.3
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.3e-72 276.9 193 80.8
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 2.5e-71 272.7 195 77.9
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 2.5e-71 272.7 195 77.9
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 8.3e-67 257.7 192 73.4
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.1e-66 257.3 193 73.1
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 3.2e-66 255.8 193 73.1
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.1e-66 255.4 193 73.1
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 5.4e-66 255.0 193 72.5
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 9.2e-66 254.2 224 70.1
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.5e-65 252.3 193 72.5
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 7.8e-65 251.1 194 71.1
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 7.8e-65 251.1 193 72.0
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 1.3e-64 250.4 193 74.1
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 6.6e-64 248.1 202 69.8
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 1.9e-63 246.5 193 72.0
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 2.5e-63 246.1 193 71.5
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 5.6e-63 245.0 193 72.5
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 5.6e-63 245.0 193 71.5
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.6e-62 243.4 202 68.8
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 3.6e-62 242.3 193 72.5
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 3.6e-62 242.3 202 67.8
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 4.7e-62 241.9 209 67.0
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 4.7e-62 241.9 209 67.0
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 4.7e-62 241.9 209 67.0
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 6.2e-62 241.5 202 69.8
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.1e-61 240.7 193 72.0
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 1.1e-61 240.7 196 70.9
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 1.1e-61 240.7 202 67.8
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.4e-61 240.4 193 70.5
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.3e-61 239.6 200 69.0
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 3.1e-61 239.2 216 66.2
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 4.0e-61 238.8 225 63.6
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.2e-60 237.3 203 67.0
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.2e-60 237.3 203 67.0
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 1.2e-60 237.3 192 70.3
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.0e-60 236.5 197 69.5
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 2.0e-60 236.5 204 66.2
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 3.4e-60 235.7 202 69.8
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.9e-60 234.2 193 69.9
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.3e-59 233.8 196 69.4
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 1.7e-59 233.4 193 66.8
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 2.2e-59 233.0 202 66.8
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 6.4e-59 231.5 202 67.8
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 8.4e-59 231.1 190 72.1
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 8.4e-59 231.1 202 67.3
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 8.4e-59 231.1 195 68.2
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.1e-58 230.7 202 67.8
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 1.9e-58 229.9 202 65.3
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 9.2e-58 227.6 204 64.2
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.7e-57 226.1 209 65.1
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 2.7e-57 226.1 202 65.3
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 6.0e-57 224.9 202 64.4
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 7.8e-57 224.6 193 66.3
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 7.8e-57 224.6 193 66.3
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 1.0e-56 224.2 197 66.5
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.3e-56 223.8 209 64.6
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.7e-56 223.4 193 65.8
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.3e-56 223.0 192 67.7
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 5.1e-56 221.9 193 67.9
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 8.6e-56 221.1 193 68.4
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.5e-55 220.3 200 63.5
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 4.3e-55 218.8 202 63.9
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 1.6e-54 216.9 193 65.8
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 2.8e-54 216.1 202 63.4
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 6.2e-54 214.9 192 66.7
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 8.1e-54 214.5 164 72.6
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 4.0e-53 212.2 202 61.4
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.2e-53 211.8 192 64.6
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.0e-52 209.9 194 64.4
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.4e-52 209.1 189 64.6
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.4e-52 208.8 194 65.5
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 9.9e-52 207.6 196 62.2
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.7e-51 206.8 193 62.2
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 3.8e-51 205.7 193 62.2
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 2.4e-50 203.0 202 60.4
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 4.2e-50 202.2 193 61.1
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.7e-49 199.5 202 58.9
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.7e-49 199.5 193 60.6
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 1.7e-48 196.8 198 60.1
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 1.1e-47 194.1 202 56.9
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.5e-47 193.7 202 59.4
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.9e-47 193.4 197 59.4
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.2e-44 184.1 193 59.6
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 8.4e-43 177.9 202 55.0
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 2.3e-40 169.9 181 58.0
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 3.0e-40 169.5 202 53.0
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 3.0e-40 169.5 173 63.0
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 6.6e-40 168.3 165 63.0
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.1e-39 167.5 188 58.0
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.5e-39 166.4 167 61.7
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 4.3e-39 165.6 203 52.2
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 7.4e-39 164.9 204 52.5
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 7.4e-39 164.9 123 75.6
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 5.3e-37 158.7 202 51.0
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 1.3e-35 154.1 181 55.2
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 2.2e-35 153.3 193 52.3
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 2.9e-35 152.9 175 56.0
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 1.4e-34 150.6 214 49.1
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 5.5e-34 148.7 96 84.4
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 7.1e-34 148.3 101 85.1
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 2.3e-32 143.3 183 54.1
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.1e-31 141.0 126 67.5
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 3.3e-31 139.4 203 49.3
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 7.4e-31 138.3 183 50.3
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 4.9e-27 125.6 167 51.5
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.9e-27 125.6 183 47.0
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-26 124.0 203 46.3
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 2.8e-22 109.8 95 73.7
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 3.4e-20 102.8 200 40.0
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 5.0e-19 99.0 81 71.6
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 7.9e-17 91.7 79 63.3
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.8e-16 90.5 56 85.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 9.7e-15 84.7 57 78.9
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 2.3e-08 63.5 52 71.2
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 8.2e-06 55.1 44 63.6


User provided reference genes

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