Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g147360 Pisum sativum HOM05D007735 ORTHO05D009638 1.3e-71 273.1 151 100.0
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 2.7e-61 238.8 150 88.7
Medtr5g024910 Medicago truncatula HOM05D007735 ORTHO05D009638 8.1e-58 227.3 149 80.5
Ca_25020_v3 Cicer arietinum L. HOM05D007735 ORTHO05D009638 3.4e-56 221.9 150 76.7
VMungo1215G0699 Vigna mungo HOM05D007735 ORTHO05D009638 6.9e-49 197.6 149 69.1
Glyma.01G156500 Glycine max HOM05D007735 ORTHO05D009638 9.0e-49 197.2 149 69.1
Phvul.002G119100 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 9.0e-49 197.2 149 69.1
Glyma.11G088300 Glycine max HOM05D007735 ORTHO05D009638 3.4e-48 195.3 149 68.5
Lalb_Chr16g0380221 Lupinus albus HOM05D007735 ORTHO05D009638 1.1e-46 190.3 147 66.7
Lj2g0017807 Lotus japonicus HOM05D007735 ORTHO05D009638 2.2e-39 166.0 145 65.5
Lalb_Chr09g0324871 Lupinus albus HOM05D007735 ORTHO05D009638 8.5e-39 164.1 151 59.6
Glyma.09G195900 Glycine max HOM05D007735 ORTHO05D009638 1.4e-38 163.3 148 58.8
Glyma.16G114400 Glycine max HOM05D007735 ORTHO05D009638 9.3e-38 160.6 152 58.6
Lalb_Chr05g0214991 Lupinus albus HOM05D007735 ORTHO05D009638 1.9e-35 152.9 146 59.6
Phvul.003G272000 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 4.1e-33 145.2 149 53.0
arahy.Tifrunner.gnm1.ann1.Q37N58 Arachis hypogaea HOM05D007735 ORTHO05D009638 1.7e-31 139.8 152 64.5
arahy.Tifrunner.gnm1.ann1.S9U9HD Arachis hypogaea HOM05D007735 ORTHO05D009638 1.7e-31 139.8 152 64.5
LjContig00247g0020335 Lotus japonicus HOM05D007735 ORTHO05D009638 1.9e-30 136.3 152 54.6
VMungo0251G0553 Vigna mungo HOM05D007735 ORTHO05D009638 9.4e-30 134.0 149 52.3
TPR.G19311 Trifolium pratense HOM05D007735 ORTHO05D009638 1.2e-29 133.7 152 54.6
Medtr8g072610 Medicago truncatula HOM05D007735 ORTHO05D009638 1.0e-28 130.6 142 54.9
Psat4g107200 Pisum sativum HOM05D007735 ORTHO05D009638 7.4e-27 124.4 149 50.3
Lalb_Chr05g0229481 Lupinus albus HOM05D007735 ORTHO05D009638 3.8e-23 112.1 137 50.4
Manes.01G157700 Manihot esculenta HOM05D007735 ORTHO05D009638 1.1e-17 94.0 119 48.7
QL06p053348 Quercus lobata HOM05D007735 ORTHO05D009638 1.3e-15 87.0 114 46.5
Sc03g0004120 Simmondsia chinensis HOM05D007735 ORTHO05D009638 1.7e-15 86.7 106 45.3
TAR381G1223 Trochodendron aralioides HOM05D007735 ORTHO05D009638 3.8e-15 85.5 111 45.0
Nn5g31061 Nelumbo nucifera HOM05D007735 ORTHO05D009638 8.5e-15 84.3 119 44.5
Cc07_g12240 Coffea canephora HOM05D007735 ORTHO05D009638 1.1e-14 84.0 141 46.1
Eucgr.J02566 Eucalyptus grandis HOM05D007735 ORTHO05D009638 1.9e-14 83.2 157 44.6
Cfa007115 Carpinus fangiana HOM05D007735 ORTHO05D009638 7.2e-14 81.3 140 41.4
Manes.02G117000 Manihot esculenta HOM05D007735 ORTHO05D009638 2.1e-13 79.7 114 43.0
Prupe.7G187700 Prunus persica HOM05D007735 ORTHO05D009638 1.5e-11 73.6 150 39.3
RcHm_v2.0_Chr2g0096741 Rosa chinensis HOM05D007735 ORTHO05D009638 3.3e-11 72.4 137 39.4
CSS0016261 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 4.4e-11 72.0 143 37.1
Solyc02g082240.1 Solanum lycopersicum HOM05D007735 ORTHO05D009638 1.7e-10 70.1 119 40.3
PGSC0003DMG400013637 Solanum tuberosum HOM05D007735 ORTHO05D009638 1.7e-10 70.1 118 40.7
FAN23G3070 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.2e-10 69.7 136 39.7
FAN28G1635 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.2e-10 69.7 140 40.0
Nitab4.5_0000855g0160 Nicotiana tabacum HOM05D007735 ORTHO05D009638 2.2e-10 69.7 144 39.6
FvH4_1g09950 Fragaria vesca HOM05D007735 ORTHO05D009638 2.8e-10 69.3 138 39.1
FAN19G1654 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.8e-10 69.3 138 39.1
Sopen02g026900 Solanum pennellii HOM05D007735 ORTHO05D009638 3.7e-10 68.9 118 40.7
SGA_v2.0_scaffold108G30951 Striga asiatica HOM05D007735 ORTHO05D009638 1.8e-09 66.6 117 39.3
Thecc.01G001800 Theobroma cacao HOM05D007735 ORTHO05D009638 1.8e-09 66.6 121 41.3
arahy.Tifrunner.gnm1.ann1.KD7YUX Arachis hypogaea HOM05D007735 ORTHO05D009638 2.4e-09 66.2 142 45.8
CSS0025501 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 2.4e-09 66.2 133 36.1
Potri.011G145200 Populus trichocarpa HOM05D007735 ORTHO05D009638 4.1e-09 65.5 144 37.5
Nitab4.5_0006309g0010 Nicotiana tabacum HOM05D007735 ORTHO05D009638 5.3e-09 65.1 112 40.2
DCAR_014121 Daucus carota HOM05D007735 ORTHO05D009638 7.0e-09 64.7 132 36.4
DCAR_014122 Daucus carota HOM05D007735 ORTHO05D009638 7.0e-09 64.7 132 36.4
Sabra11G0130300 Salix brachista HOM05D007735 ORTHO05D009638 7.0e-09 64.7 135 36.3
Sabra16G0309000 Salix brachista HOM05D007735 ORTHO05D009638 7.0e-09 64.7 119 40.3
Nitab4.5_0004448g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.2e-08 63.9 147 39.5
Potri.001G456700 Populus trichocarpa HOM05D007735 ORTHO05D009638 1.2e-08 63.9 111 42.3
ATR0605G038 Amborella trichopoda HOM05D007735 ORTHO05D009638 2.7e-08 62.8 108 40.7
ECA246G0225 Erigeron canadensis HOM05D007735 ORTHO05D009638 2.7e-08 62.8 109 37.6
FAN26G0974 Fragaria x ananassa HOM05D007735 ORTHO05D009638 3.5e-08 62.4 131 38.2
Lsat_1_v5_gn_3_69161 Lactuca sativa HOM05D007735 ORTHO05D009638 3.5e-08 62.4 138 37.0
Peaxi162Scf00918g00052 Petunia axillaris HOM05D007735 ORTHO05D009638 4.5e-08 62.0 116 39.7
Haze_22869 Corylus avellana HOM05D007735 ORTHO05D009638 7.7e-08 61.2 104 41.3
FAN23G2983 Fragaria x ananassa HOM05D007735 ORTHO05D009638 7.7e-08 61.2 131 38.2
Lsat_1_v5_gn_8_114101 Lactuca sativa HOM05D007735 ORTHO05D009638 1.3e-07 60.5 111 36.9
CiPaw.07G000500 Carya illinoinensis HOM05D007735 ORTHO05D009638 1.7e-07 60.1 105 41.0
Sed0019252 Sechium edule HOM05D007735 ORTHO05D009638 1.7e-07 60.1 103 36.9
Aqoxy6G03024 Aquilegia oxysepala HOM05D007735 ORTHO05D009638 2.9e-07 59.3 109 37.6
COL.COLO4_22568 Corchorus olitorius HOM05D007735 ORTHO05D009638 6.5e-07 58.2 121 38.8
Oeu045753.2 Olea europaea HOM05D007735 ORTHO05D009638 6.5e-07 58.2 120 33.3
SGA_v2.0_scaffold2G00933 Striga asiatica HOM05D007735 ORTHO05D009638 1.5e-06 57.0 110 35.5
Lsat_1_v5_gn_2_74220 Lactuca sativa HOM05D007735 ORTHO05D009638 1.9e-06 56.6 103 35.9
HPP92_018900 Vanilla planifolia HOM05D026889 ORTHO05D009638 1.9e-06 56.6 109 38.5
Eucgr.I02199 Eucalyptus grandis HOM05D007735 ORTHO05D009638 3.2e-06 55.8 137 31.4
Lsat_1_v5_gn_8_114121 Lactuca sativa HOM05D007735 ORTHO05D009638 3.2e-06 55.8 107 38.3
HPP92_018844 Vanilla planifolia HOM05D026889 ORTHO05D009638 4.2e-06 55.5 109 38.5
Gohir.A05G393900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 5.5e-06 55.1 105 37.1
Gohir.D04G020900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 7.2e-06 54.7 103 37.9
PGSC0003DMG400018690 Solanum tuberosum HOM05D007735 ORTHO05D009638 7.2e-06 54.7 108 37.0
Gorai.012G025100 Gossypium raimondii HOM05D007735 ORTHO05D009638 9.4e-06 54.3 103 37.9


User provided reference genes

Program Settings