Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1364.0 695 100.0
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1298.5 696 95.3
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 0.0e+00 1277.7 679 95.6
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1260.0 696 91.8
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1250.7 696 90.9
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1232.2 696 90.5
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1215.7 696 89.2
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 0.0e+00 1214.9 647 95.1
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1210.7 697 88.4
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 0.0e+00 1208.4 696 88.8
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1144.8 696 83.9
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1138.3 690 84.2
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1136.3 697 83.4
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1122.1 693 82.1
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1120.5 693 82.1
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1114.4 690 82.0
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1113.6 693 82.7
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1109.0 690 81.7
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 0.0e+00 1105.1 696 80.7
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1104.4 697 81.9
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1104.0 698 81.5
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1102.0 697 81.2
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 0.0e+00 1097.8 732 78.3
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 0.0e+00 1097.8 694 80.8
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1094.3 697 80.6
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 0.0e+00 1094.0 703 79.8
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1093.6 745 77.3
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 0.0e+00 1088.6 697 80.8
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 0.0e+00 1085.5 696 80.5
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 0.0e+00 1083.9 696 80.2
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 0.0e+00 1082.4 697 80.5
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 0.0e+00 1080.1 691 79.5
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 0.0e+00 1078.9 696 79.7
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 4.8e-312 1073.5 696 79.6
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 694 78.2
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 2.8e-310 1068.1 688 79.2
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 1.4e-309 1065.8 697 77.9
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 1.4e-309 1065.8 696 79.2
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 2.3e-309 1065.1 691 77.6
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.6e-308 1061.6 691 78.4
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 3.4e-308 1061.2 696 77.6
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 7.5e-308 1060.1 688 78.8
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 9.8e-308 1059.7 694 78.0
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 9.8e-308 1059.7 693 78.1
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 1.3e-307 1059.3 695 78.8
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 1.7e-307 1058.9 696 77.2
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 3.7e-307 1057.7 696 77.9
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 1.4e-306 1055.8 697 77.6
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.4e-306 1055.8 693 78.5
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 1.4e-306 1055.8 691 79.3
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 3.2e-306 1054.7 691 77.9
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 4.1e-306 1054.3 691 77.9
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 9.2e-306 1053.1 741 74.4
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 1.6e-305 1052.4 691 78.0
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.9e-305 1050.4 688 78.1
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 1.1e-303 1046.2 696 77.4
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 8.0e-302 1040.0 711 75.2
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 1.5e-300 1035.8 718 74.0
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 2.7e-297 1025.0 696 76.3
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 7.8e-297 1023.5 691 75.7
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 2.3e-296 1021.9 694 75.4
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 5.6e-295 1017.3 692 77.0
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 4.7e-294 1014.2 696 75.0
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 6.2e-294 1013.8 694 75.1
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 1.1e-293 1013.1 695 75.3
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.8e-293 1012.3 695 75.1
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 1.8e-293 1012.3 802 67.2
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 8.9e-293 1010.0 696 74.9
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 2.2e-291 1005.4 696 74.7
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.2e-291 1005.4 691 75.4
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 2.9e-291 1005.0 696 74.7
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 8.3e-291 1003.4 696 74.6
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 8.3e-291 1003.4 696 74.6
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 8.3e-291 1003.4 691 75.3
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 5.4e-290 1000.7 697 74.6
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 7.1e-290 1000.3 696 74.7
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 2.1e-289 998.8 694 74.6
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 4.6e-289 997.7 696 74.3
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.1e-287 993.0 693 73.4
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 1.9e-287 992.3 692 74.6
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 7.3e-287 990.3 696 73.9
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 4.3e-279 964.5 695 71.8
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 1.1e-277 959.9 691 71.3
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 5.6e-271 937.6 700 69.0
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 1.5e-268 929.5 1201 47.9
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 3.0e-264 915.2 689 68.7
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 8.7e-264 913.7 691 69.5
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.8e-261 906.0 553 83.2
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 9.3e-250 867.1 772 63.6
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 3.3e-247 858.6 720 62.4
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 1.0e-240 837.0 725 60.4
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.3e-239 831.6 578 74.0
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.4e-234 816.6 536 78.7
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 5.9e-220 768.1 511 76.5
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.2e-219 766.1 469 81.7
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 8.8e-216 754.2 517 74.5
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 1.2e-207 727.2 641 59.0
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 2.8e-206 722.6 693 56.9
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 4.4e-191 672.2 420 80.2
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 3.1e-144 516.5 718 42.2
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 4.2e-141 506.1 700 42.0
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 5.8e-135 485.7 704 40.3
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 6.9e-128 462.2 693 44.2
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.5e-122 444.5 694 45.1
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 5.7e-122 442.6 271 84.5
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 1.1e-117 428.3 274 81.8
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 6.9e-112 409.1 474 48.1
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 7.7e-111 405.6 661 43.9
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.0e-107 395.2 232 83.6
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.1e-96 358.6 433 51.7
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.4e-88 331.6 247 70.9
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 1.2e-87 328.6 678 36.4
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.0e-79 301.2 221 71.0
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 7.3e-77 292.7 293 58.0
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 2.1e-68 264.6 205 71.2
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 1.5e-66 258.5 167 74.9
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 1.8e-59 235.0 143 86.0
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 1.8e-59 235.0 143 86.0
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 4.7e-52 210.3 125 90.4
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 9.6e-45 186.0 101 89.1
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 6.4e-33 146.7 115 61.7
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 2.9e-25 121.3 64 95.3
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.2e-24 117.5 84 63.1
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 1.0e-22 112.8 86 73.3
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 3.0e-22 111.3 203 40.4
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 1.1e-13 82.8 151 36.4


User provided reference genes

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