Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 1.7e-58 229.2 120 100.0
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 3.3e-38 161.8 109 82.6
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 6.3e-37 157.5 107 82.2
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 4.1e-36 154.8 106 81.1
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 3.8e-34 148.3 110 79.1
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 4.8e-29 131.3 109 74.3
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 2.0e-27 125.9 108 68.5
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 2.6e-27 125.6 106 71.7
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 1.3e-26 123.2 101 72.3
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 4.4e-22 108.2 106 56.6
TPR.G36141 Trifolium pratense HOM05D005197 ORTHO05D006263 9.7e-22 107.1 75 81.3
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 1.3e-21 106.7 103 58.3
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 2.2e-21 105.9 94 66.0
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 2.8e-21 105.5 103 57.3
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 4.8e-21 104.8 95 58.9
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 6.3e-21 104.4 96 60.4
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 1.4e-20 103.2 102 58.8
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 1.2e-19 100.1 104 53.8
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 3.5e-19 98.6 93 53.8
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 5.5e-17 91.3 84 63.1
arahy.Tifrunner.gnm1.ann1.G7W534 Arachis hypogaea HOM05D005197 ORTHO05D006263 1.2e-16 90.1 100 54.0
arahy.Tifrunner.gnm1.ann1.JB60CZ Arachis hypogaea HOM05D005197 ORTHO05D006263 1.2e-16 90.1 100 54.0
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 6.1e-16 87.8 111 44.1
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 1.2e-14 83.6 89 50.6
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 3.4e-14 82.0 94 45.7
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 5.7e-14 81.3 89 50.6
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 9.8e-14 80.5 101 45.5
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 1.7e-13 79.7 89 52.8
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 2.8e-13 79.0 109 43.1
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 2.8e-13 79.0 89 49.4
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 4.8e-13 78.2 97 42.3
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 8.3e-13 77.4 92 48.9
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 8.3e-13 77.4 99 43.4
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 1.8e-12 76.3 88 50.0
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 1.8e-12 76.3 88 50.0
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 1.8e-12 76.3 89 46.1
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 3.1e-12 75.5 104 41.3
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 4.1e-12 75.1 115 36.5
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 5.4e-12 74.7 90 46.7
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 7.0e-12 74.3 107 43.9
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 9.1e-12 73.9 107 43.0
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 9.1e-12 73.9 65 58.5
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 1.2e-11 73.6 97 43.3
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 1.2e-11 73.6 105 42.9
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 1.6e-11 73.2 104 42.3
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 2.0e-11 72.8 96 41.7
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 2.0e-11 72.8 99 45.5
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 4.5e-11 71.6 113 37.2
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 4.5e-11 71.6 96 39.6
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 4.5e-11 71.6 96 39.6
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 4.5e-11 71.6 95 46.3
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 4.5e-11 71.6 91 45.1
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 7.7e-11 70.9 94 41.5
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 1.3e-10 70.1 65 52.3
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 2.9e-10 68.9 105 43.8
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 5.0e-10 68.2 96 46.9
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 5.0e-10 68.2 101 39.6
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 6.6e-10 67.8 98 41.8
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 6.6e-10 67.8 100 41.0
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 1.5e-09 66.6 108 44.4
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.9e-09 66.2 99 40.4
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.9e-09 66.2 100 40.0
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 2.5e-09 65.9 90 41.1
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 4.2e-09 65.1 125 36.8
Eucgr.E01175 Eucalyptus grandis HOM05D012124 ORTHO05D006263 7.2e-09 64.3 68 55.9
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 7.2e-09 64.3 101 35.6
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 7.2e-09 64.3 95 42.1
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 9.5e-09 63.9 90 42.2
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 2.1e-08 62.8 62 53.2
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 2.1e-08 62.8 95 37.9
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 2.1e-08 62.8 58 56.9
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 6.1e-08 61.2 92 41.3
THA.LOC104824415 Tarenaya hassleriana HOM05D012124 ORTHO05D014419 8.0e-08 60.8 83 47.0
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 1.0e-07 60.5 113 35.4
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 2.3e-07 59.3 93 44.1
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 3.0e-07 58.9 95 37.9
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 3.0e-07 58.9 91 38.5
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 4.0e-07 58.5 90 38.9
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 5.2e-07 58.2 109 36.7
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 2.0e-06 56.2 92 33.7
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 2.0e-06 56.2 104 35.6
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 2.6e-06 55.8 104 36.5
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 2.6e-06 55.8 97 37.1
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 3.4e-06 55.5 98 40.8
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 4.4e-06 55.1 92 38.0
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 4.4e-06 55.1 110 33.6
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 7.5e-06 54.3 92 40.2
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 9.8e-06 53.9 49 53.1


User provided reference genes

Program Settings