Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.2e-67 259.2 173 100.0
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 5.6e-63 244.6 173 83.2
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 2.4e-61 239.2 173 82.1
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 7.6e-60 234.2 173 92.5
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.2e-52 210.3 173 75.7
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 3.4e-52 208.8 173 86.7
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 2.2e-51 206.1 173 83.8
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 2.2e-51 206.1 173 83.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 2.2e-51 206.1 173 84.4
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 5.5e-50 201.4 173 82.1
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 9.3e-50 200.7 173 85.0
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 5.1e-48 194.9 174 82.8
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 8.7e-48 194.1 174 74.7
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.1e-45 187.2 166 71.1
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.8e-45 186.4 171 81.3
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 4.5e-44 181.8 173 80.3
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 4.5e-44 181.8 158 72.8
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.7e-43 179.9 166 68.1
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 2.2e-43 179.5 171 64.9
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.2e-43 179.5 171 64.9
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.2e-43 179.5 171 64.9
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.2e-43 179.5 167 81.4
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.9e-43 179.1 177 54.2
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.9e-43 179.1 167 81.4
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 2.9e-43 179.1 167 81.4
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.8e-43 178.7 171 66.7
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 8.5e-43 177.6 171 78.9
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.1e-42 177.2 166 68.7
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.1e-42 177.2 175 65.7
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.4e-42 176.8 165 67.3
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.4e-42 176.8 169 80.5
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 3.2e-42 175.6 168 78.0
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.2e-42 175.6 171 64.3
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 4.2e-42 175.3 169 78.7
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 7.2e-42 174.5 174 78.2
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 9.4e-42 174.1 166 66.3
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.2e-41 173.7 174 78.2
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.6e-41 173.3 168 64.3
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 3.6e-41 172.2 173 65.3
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.6e-41 172.2 169 66.9
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 3.6e-41 172.2 181 76.2
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 7.9e-41 171.0 171 74.3
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.4e-40 170.2 167 75.4
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.4e-40 170.2 167 67.1
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 2.3e-40 169.5 166 65.1
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 3.0e-40 169.1 166 67.5
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 3.0e-40 169.1 169 78.1
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 3.0e-40 169.1 169 78.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 3.9e-40 168.7 176 64.8
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 8.8e-40 167.5 171 65.5
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.1e-39 167.2 166 60.8
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 2.0e-39 166.4 160 78.8
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 2.0e-39 166.4 170 74.7
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.5e-39 166.0 174 71.8
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.3e-39 165.6 158 65.8
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 3.3e-39 165.6 173 63.6
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 3.3e-39 165.6 178 75.8
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.2e-38 162.9 158 65.2
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 4.8e-38 161.8 159 74.2
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.8e-38 161.8 167 75.4
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 6.3e-38 161.4 166 75.3
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.1e-37 160.6 160 69.4
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.1e-37 160.6 158 69.0
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.4e-37 159.5 154 77.3
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 6.9e-37 157.9 172 61.6
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.1e-37 157.5 165 73.9
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.2e-36 157.1 166 62.7
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.2e-36 157.1 165 74.5
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.2e-36 157.1 167 62.9
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.5e-36 156.8 171 70.8
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.5e-36 156.8 165 61.8
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 2.0e-36 156.4 165 72.7
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.0e-36 156.4 173 72.8
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 2.0e-36 156.4 158 72.2
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.6e-36 156.0 159 76.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.6e-36 156.0 159 76.7
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 7.7e-36 154.5 174 60.9
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.7e-35 153.3 169 62.1
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.2e-35 152.9 161 61.5
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.2e-35 152.9 176 71.0
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.2e-35 152.9 172 70.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.2e-35 152.9 174 59.8
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.9e-35 152.5 160 77.5
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 3.8e-35 152.1 166 52.4
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.0e-35 151.8 158 64.6
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 5.0e-35 151.8 176 72.2
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 5.0e-35 151.8 171 73.7
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 8.5e-35 151.0 177 71.2
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.1e-34 150.6 174 67.2
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 177 61.6
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.9e-34 149.8 175 58.9
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.2e-34 149.1 173 67.1
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 5.5e-34 148.3 159 75.5
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 5.5e-34 148.3 144 76.4
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 5.5e-34 148.3 177 70.6
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.2e-34 147.9 177 70.1
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 9.4e-34 147.5 231 39.8
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.2e-33 147.1 173 58.4
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.1e-33 146.4 173 58.4
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.6e-33 145.6 177 57.6
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 4.7e-33 145.2 176 69.9
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.8e-32 143.3 155 61.9
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 3.9e-32 142.1 178 68.0
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 3.9e-32 142.1 178 68.0
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 5.1e-32 141.7 178 67.4
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 5.1e-32 141.7 178 67.4
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 5.1e-32 141.7 165 49.1
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 5.1e-32 141.7 169 70.4
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 2.0e-31 139.8 179 66.5
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 2.6e-31 139.4 177 55.9
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.6e-31 139.4 137 71.5
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.3e-31 139.0 167 56.9
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.4e-31 138.7 173 56.6
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 5.7e-31 138.3 155 49.0
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.7e-31 138.3 155 49.0
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.3e-30 137.1 175 56.6
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 1.3e-30 137.1 155 48.4
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.3e-30 137.1 173 56.6
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.3e-30 137.1 173 56.6
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.7e-30 136.7 161 50.3
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.7e-30 136.7 159 72.3
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.2e-30 136.3 159 59.7
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 150 74.7
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.2e-30 136.3 173 56.6
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.8e-30 136.0 176 55.7
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 4.8e-30 135.2 167 55.7
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 4.8e-30 135.2 167 55.7
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.8e-30 135.2 167 55.7
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 4.8e-30 135.2 161 56.5
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.8e-30 135.2 168 47.0
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.2e-28 130.6 129 69.0
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.0e-28 129.8 161 56.5
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.5e-28 129.0 164 43.9
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-26 124.0 169 66.9
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.5e-26 123.6 169 50.9
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.2e-25 120.6 149 71.1
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.5e-23 113.6 126 61.9
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 7.5e-23 111.3 121 66.9
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 9.7e-23 110.9 126 64.3
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 2.0e-20 103.2 126 59.5
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.3e-19 100.5 117 64.1
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 5.0e-19 98.6 152 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 6.5e-19 98.2 107 44.9
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.2e-17 94.0 83 57.8
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.6e-17 93.6 94 76.6
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 8.0e-17 91.3 101 67.3
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.0e-16 89.4 103 66.0
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.8e-14 82.8 83 50.6
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 2.2e-11 73.2 46 69.6
arahy.Tifrunner.gnm1.ann1.6NYM2I Arachis hypogaea HOM05D000336 ORTHO05D023213 1.2e-09 67.4 44 68.2
arahy.Tifrunner.gnm1.ann1.UP5F84 Arachis hypogaea HOM05D019517 ORTHO05D023213 1.8e-08 63.5 45 71.1
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 6.8e-08 61.6 47 57.4


User provided reference genes

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