Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 5.6e-295 1016.9 530 100.0
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 3.9e-216 755.0 499 81.6
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 1.0e-208 730.3 499 79.2
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 3.9e-208 728.4 499 78.8
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 7.0e-205 717.6 499 78.4
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 1.1e-202 710.3 499 76.2
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 2.5e-202 709.1 499 76.2
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 5.5e-202 708.0 499 76.0
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 3.6e-201 705.3 499 76.0
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.2e-199 700.3 499 75.4
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 1.3e-198 696.8 499 74.1
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 1.8e-197 693.0 499 74.7
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 1.8e-197 693.0 499 74.7
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 4.2e-194 681.8 499 73.1
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.4e-192 676.8 499 72.3
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 6.8e-192 674.5 499 71.5
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 3.4e-191 672.2 499 72.5
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 2.2e-190 669.5 503 72.0
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.1e-189 667.2 499 71.3
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.1e-189 667.2 499 71.3
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 1.8e-189 666.4 503 72.4
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 3.1e-189 665.6 503 72.4
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 3.1e-189 665.6 503 71.2
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 3.1e-189 665.6 499 72.1
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 5.4e-189 664.8 503 71.4
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 5.4e-189 664.8 499 71.3
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 7.0e-189 664.5 499 70.7
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 1.2e-188 663.7 503 71.4
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 1.2e-188 663.7 503 70.8
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 2.7e-188 662.5 503 71.8
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 2.7e-188 662.5 503 71.8
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 5.9e-188 661.4 536 68.7
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 7.7e-188 661.0 499 71.5
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 1.0e-187 660.6 503 72.0
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 1.3e-187 660.2 499 71.1
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 2.9e-187 659.1 499 70.9
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 3.8e-187 658.7 499 71.3
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 1.5e-186 656.8 499 70.3
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 1.6e-185 653.3 502 70.7
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 2.7e-185 652.5 499 69.3
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 6.1e-185 651.4 503 71.2
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 6.1e-185 651.4 503 71.2
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 8.0e-185 651.0 499 69.7
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 1.4e-184 650.2 503 70.8
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 2.3e-184 649.4 499 69.7
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 4.0e-184 648.7 519 68.2
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 5.2e-184 648.3 503 70.8
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.2e-184 648.3 503 70.8
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.2e-184 648.3 503 70.8
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 6.8e-184 647.9 499 69.1
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 6.8e-184 647.9 499 69.9
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 6.8e-184 647.9 499 70.1
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 8.8e-184 647.5 499 69.5
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 8.8e-184 647.5 594 62.8
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 1.2e-183 647.1 499 69.5
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.2e-183 647.1 503 70.6
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 2.6e-183 646.0 499 69.9
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 9.8e-183 644.0 499 69.3
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 9.8e-183 644.0 510 68.4
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 1.3e-182 643.7 499 69.1
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 1.3e-182 643.7 499 69.3
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 1.7e-182 643.3 504 70.0
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.7e-182 643.3 503 69.0
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 2.2e-182 642.9 504 70.0
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 4.9e-182 641.7 499 69.7
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 8.3e-182 641.0 499 69.7
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 7.0e-181 637.9 499 69.5
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 1.2e-180 637.1 499 68.7
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 1.6e-180 636.7 544 65.1
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 6.6e-179 631.3 502 69.9
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 3.3e-178 629.0 503 66.8
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 1.2e-177 627.1 503 67.6
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 2.1e-177 626.3 499 67.7
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 6.1e-177 624.8 500 67.8
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 5.2e-176 621.7 499 67.9
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 2.0e-175 619.8 499 67.5
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 1.7e-174 616.7 499 67.5
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 2.2e-174 616.3 499 66.9
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 1.4e-173 613.6 499 66.9
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 5.4e-173 611.7 499 66.7
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 2.7e-172 609.4 499 67.3
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 7.8e-172 607.8 500 67.0
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 7.8e-172 607.8 500 67.0
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 7.8e-172 607.8 500 67.0
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 7.8e-172 607.8 500 67.0
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 7.8e-172 607.8 500 67.0
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 1.7e-171 606.7 500 66.6
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 3.0e-171 605.9 505 66.5
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 1.3e-166 590.5 499 65.3
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 1.7e-166 590.1 464 71.6
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 1.9e-162 576.6 483 65.0
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 4.0e-152 542.3 500 58.0
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 1.9e-138 496.9 505 54.3
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 2.1e-137 493.4 500 54.6
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 5.1e-131 472.2 529 52.0
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.1e-130 471.1 310 78.4
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 6.9e-128 461.8 404 63.4
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 1.9e-122 443.7 348 69.8
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 4.5e-119 432.6 339 69.6
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 3.8e-118 429.5 477 55.8
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 2.5e-117 426.8 343 70.3
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 2.3e-115 420.2 267 82.4
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 2.3e-115 420.2 267 82.4
Zm00001eb208180 Zea mays HOM05D003193 ORTHO05D004924 3.0e-115 419.9 345 67.8
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 9.0e-112 408.3 499 50.7
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 2.2e-110 403.7 267 76.8
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 2.1e-108 397.1 270 74.8
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 6.1e-108 395.6 338 64.5
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 1.9e-106 390.6 500 49.8
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 5.7e-106 389.0 322 62.7
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 9.4e-101 371.7 310 62.3
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 3.8e-94 349.7 522 41.2
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 5.7e-90 335.9 364 55.2
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.4e-88 331.3 230 77.4
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 1.4e-83 314.7 503 40.6
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 2.0e-82 310.8 507 40.4
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 3.0e-67 260.4 240 63.8
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 4.0e-67 260.0 244 61.9
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 2.6e-66 257.3 235 60.9
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 3.8e-62 243.4 332 46.4
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 1.1e-61 241.9 160 76.9
Psat2g117480 Pisum sativum HOM05D003193 ORTHO05D029199 5.6e-61 239.6 141 89.4
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.2e-58 231.9 160 73.8
Actinidia06820 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.3e-54 218.4 161 72.0
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 2.0e-50 204.5 130 83.8
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 3.7e-49 200.3 199 58.8
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 3.5e-39 167.2 98 84.7
Hund17244 Selenicereus undatus HOM05D003193 ORTHO05D006083 6.0e-31 139.8 109 70.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.3e-30 137.9 128 56.2
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.3e-30 137.9 128 56.2
Psat2g117520 Pisum sativum HOM05D003193 ORTHO05D023087 3.9e-30 137.1 79 84.8
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.2e-23 115.5 116 57.8
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.2e-23 115.5 74 77.0
DCAR_025592 Daucus carota HOM05D003193 ORTHO05D029199 2.1e-20 104.8 54 92.6
Lsat_1_v5_gn_8_52980 Lactuca sativa HOM05D003193 ORTHO05D004924 1.4e-16 92.0 132 44.7
DCAR_015795 Daucus carota HOM05D003193 ORTHO05D029199 2.5e-13 81.3 43 90.7
Lsat_1_v5_gn_8_118300 Lactuca sativa HOM05D003193 ORTHO05D002149 2.1e-12 78.2 238 28.6
MCO13G622 Micromonas commoda HOM05D000681 ORTHO05D025872 2.1e-12 78.2 301 22.6
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 3.1e-11 74.3 46 73.9
TWI60G1601 Tripterygium wilfordii HOM05D003193 ORTHO05D029199 5.3e-11 73.6 41 82.9
Actinidia06817 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.5e-10 72.0 58 69.0
Lsat_1_v5_gn_5_158860 Lactuca sativa HOM05D003193 ORTHO05D231496 2.6e-10 71.2 62 59.7
Cre04.g222700 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 2.4e-08 64.7 123 30.1
PRCOL_00000464 Prasinoderma coloniale HOM05D000681 ORTHO05D025872 6.0e-07 60.1 89 31.5
SEGI_11076 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.0e-06 59.3 46 54.3


User provided reference genes

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