Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g113240 Pisum sativum HOM05D003535 ORTHO05D003986 4.2e-176 621.3 328 100.0
TPR.G13941 Trifolium pratense HOM05D003535 ORTHO05D003986 1.5e-136 490.0 301 87.7
Medtr5g035810 Medicago truncatula HOM05D003535 ORTHO05D003986 3.7e-132 475.3 300 84.0
Ca_18085_v3 Cicer arietinum L. HOM05D003535 ORTHO05D003986 1.6e-130 469.9 300 84.0
Lj2g0022595 Lotus japonicus HOM05D003535 ORTHO05D003986 5.0e-121 438.3 301 80.1
VMungo1215G1093 Vigna mungo HOM05D003535 ORTHO05D003986 1.9e-115 419.9 303 77.2
Phvul.002G076000 Phaseolus vulgaris HOM05D003535 ORTHO05D003986 6.6e-113 411.4 304 75.3
Glyma.02G029300 Glycine max HOM05D003535 ORTHO05D003986 3.3e-112 409.1 305 74.8
Lalb_Chr16g0382501 Lupinus albus HOM05D003535 ORTHO05D003986 3.6e-111 405.6 301 74.1
Glyma.01G036700 Glycine max HOM05D003535 ORTHO05D003986 2.7e-106 389.4 305 72.1
arahy.Tifrunner.gnm1.ann1.Y99B41 Arachis hypogaea HOM05D003535 ORTHO05D003986 5.2e-102 375.2 295 72.9
arahy.Tifrunner.gnm1.ann1.FE2K59 Arachis hypogaea HOM05D003535 ORTHO05D003986 1.2e-98 364.0 309 68.6
arahy.Tifrunner.gnm1.ann1.KT3LL4 Arachis hypogaea HOM05D003535 ORTHO05D003986 6.0e-90 335.1 305 64.9
arahy.Tifrunner.gnm1.ann1.95J0BI Arachis hypogaea HOM05D003535 ORTHO05D003986 1.0e-81 307.8 333 59.2
Prupe.1G260800 Prunus persica HOM05D003535 ORTHO05D003986 7.9e-74 281.6 307 54.4
Thecc.02G240800 Theobroma cacao HOM05D003535 ORTHO05D003986 1.8e-73 280.4 311 55.3
Cfa009095 Carpinus fangiana HOM05D003535 ORTHO05D003986 2.1e-71 273.5 300 54.7
FvH4_4g35140 Fragaria vesca HOM05D003535 ORTHO05D003986 2.4e-70 270.0 308 54.2
Manes.01G195800 Manihot esculenta HOM05D003535 ORTHO05D003986 3.4e-69 266.2 307 51.1
MD16G1085300 Malus domestica HOM05D003535 ORTHO05D003986 2.2e-68 263.5 307 54.4
FAN12G2559 Fragaria x ananassa HOM05D003535 ORTHO05D003986 8.5e-68 261.5 320 52.2
Duzib251G0917 Durio zibethinus HOM05D003535 ORTHO05D003986 2.5e-67 260.0 315 53.0
Potri.008G193300 Populus trichocarpa HOM05D003535 ORTHO05D003986 2.5e-67 260.0 310 51.9
Manes.05G092900 Manihot esculenta HOM05D003535 ORTHO05D003986 4.2e-67 259.2 309 52.1
FAN07G1389 Fragaria x ananassa HOM05D003535 ORTHO05D003986 9.3e-67 258.1 319 53.0
Ciclev10032090m.g Citrus clementina HOM05D003535 ORTHO05D003986 1.6e-66 257.3 307 52.4
Duzib251G0037 Durio zibethinus HOM05D003535 ORTHO05D003986 4.6e-66 255.8 315 52.7
Haze_12127 Corylus avellana HOM05D003535 ORTHO05D003986 2.3e-65 253.4 322 50.0
Atru.chr11.1948 Acer truncatum HOM05D003535 ORTHO05D003986 5.1e-65 252.3 307 51.1
Duzib248G0495 Durio zibethinus HOM05D003535 ORTHO05D003986 8.7e-65 251.5 326 48.8
CiPaw.05G145800 Carya illinoinensis HOM05D003535 ORTHO05D003986 1.9e-64 250.4 306 51.6
Gohir.A12G142200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 1.6e-63 247.3 316 52.5
Gohir.D12G147100 Gossypium hirsutum HOM05D003535 ORTHO05D003986 4.8e-63 245.7 316 52.2
QL03p067125 Quercus lobata HOM05D003535 ORTHO05D003986 4.8e-63 245.7 311 51.4
RcHm_v2.0_Chr4g0444731 Rosa chinensis HOM05D003535 ORTHO05D003986 6.3e-63 245.4 322 52.2
Gorai.008G158300 Gossypium raimondii HOM05D003535 ORTHO05D003986 1.8e-62 243.8 317 52.4
Gohir.D04G138200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 2.4e-62 243.4 316 50.0
Gorai.012G123100 Gossypium raimondii HOM05D003535 ORTHO05D003986 9.1e-62 241.5 316 49.7
Gohir.A04G098600 Gossypium hirsutum HOM05D003535 ORTHO05D003986 2.6e-61 240.0 316 49.7
Eucgr.B02565 Eucalyptus grandis HOM05D003535 ORTHO05D003986 7.7e-61 238.4 304 49.3
Potri.010G036500 Populus trichocarpa HOM05D003535 ORTHO05D003986 5.0e-60 235.7 308 49.4
FAN17G0780 Fragaria x ananassa HOM05D003535 ORTHO05D003986 9.4e-59 231.5 354 45.8
TAR629G0129 Trochodendron aralioides HOM05D003535 ORTHO05D003986 6.1e-58 228.8 303 50.5
Actinidia15000 Actinidia chinensis HOM05D003535 ORTHO05D003986 8.8e-57 224.9 310 46.1
FAN22G0047 Fragaria x ananassa HOM05D003535 ORTHO05D003986 2.0e-56 223.8 329 47.4
MELO3C002939.2 Cucumis melo HOM05D003535 ORTHO05D003986 3.3e-56 223.0 305 48.2
CSS0014348 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 7.4e-56 221.9 315 45.1
CSS0008340 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 9.7e-56 221.5 315 45.4
ClCG09G022140 Citrullus lanatus HOM05D003535 ORTHO05D003986 9.7e-56 221.5 336 46.1
CsaV3_5G025420 Cucumis sativus L. HOM05D003535 ORTHO05D003986 1.7e-55 220.7 305 49.2
Sabra10G0028600 Salix brachista HOM05D003535 ORTHO05D003986 1.7e-55 220.7 308 47.1
TWI36G0475 Tripterygium wilfordii HOM05D003535 ORTHO05D003986 1.4e-54 217.6 327 46.2
MD13G1085900 Malus domestica HOM05D003535 ORTHO05D003986 3.1e-54 216.5 307 48.2
TWI18G1263 Tripterygium wilfordii HOM05D003535 ORTHO05D003986 4.1e-54 216.1 339 45.7
PGR119G2209 Punica granatum HOM05D003535 ORTHO05D003986 1.2e-53 214.5 307 47.6
Sed0012956 Sechium edule HOM05D003535 ORTHO05D003986 5.0e-52 209.1 305 47.2
Dinv31119 Davidia involucrata HOM05D003535 ORTHO05D003986 1.1e-51 208.0 308 47.4
Hma1.2p1_1049F.1_g251850 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 1.1e-51 208.0 366 41.8
vmacro16290 Vaccinium macrocarpon HOM05D003535 ORTHO05D003986 1.1e-51 208.0 323 44.0
GSVIVG01020154001 Vitis vinifera HOM05D003535 ORTHO05D003986 3.2e-51 206.5 304 45.1
Sabra08G0146800 Salix brachista HOM05D003535 ORTHO05D003986 3.0e-49 199.9 329 44.4
Nn4g22912 Nelumbo nucifera HOM05D003535 ORTHO05D003986 1.1e-48 198.0 298 44.3
Dinv24911 Davidia involucrata HOM05D003535 ORTHO05D003986 2.0e-48 197.2 314 43.9
Rhsim12G0125300 Rhododendron simsii HOM05D003535 ORTHO05D003986 2.6e-48 196.8 338 43.2
Nn3g17007 Nelumbo nucifera HOM05D003535 ORTHO05D003986 2.2e-47 193.7 303 44.2
Hund25313 Selenicereus undatus HOM05D003535 ORTHO05D003986 1.4e-46 191.0 325 42.5
MBI14_g12776_MAGBIO Magnolia biondii HOM05D003535 ORTHO05D003986 5.3e-46 189.1 301 44.9
Actinidia27767 Actinidia chinensis HOM05D003535 ORTHO05D003986 7.0e-46 188.7 318 42.8
Hma1.2p1_0160F.1_g070560 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 7.7e-45 185.3 317 42.9
Sc11g0001410 Simmondsia chinensis HOM05D003535 ORTHO05D003986 2.2e-44 183.7 282 44.3
vmacro01199 Vaccinium macrocarpon HOM05D003535 ORTHO05D003986 2.2e-44 183.7 313 43.5
Rhsim12G0050600 Rhododendron simsii HOM05D003535 ORTHO05D003986 5.0e-44 182.6 313 41.5
Actinidia04050 Actinidia chinensis HOM05D003535 ORTHO05D003986 6.5e-44 182.2 234 47.0
Sopen05g002290 Solanum pennellii HOM05D003535 ORTHO05D003986 2.7e-42 176.8 392 36.7
PGSC0003DMG400015612 Solanum tuberosum HOM05D003535 ORTHO05D003986 1.8e-41 174.1 395 36.2
Actinidia08185 Actinidia chinensis HOM05D003535 ORTHO05D003986 4.0e-41 172.9 316 41.1
Solyc05g006320.4 Solanum lycopersicum HOM05D003535 ORTHO05D003986 1.2e-40 171.4 392 36.0
THA.LOC104822953 Tarenaya hassleriana HOM05D003535 ORTHO05D003986 4.4e-40 169.5 367 38.7
THA.LOC104824671 Tarenaya hassleriana HOM05D003535 ORTHO05D003986 1.3e-39 167.9 330 40.0
GSVIVG01007821001 Vitis vinifera HOM05D003535 ORTHO05D003986 2.8e-39 166.8 297 40.4
Dinv33673 Davidia involucrata HOM05D003535 ORTHO05D003986 8.2e-39 165.2 302 42.4
TAR622G1103 Trochodendron aralioides HOM05D003535 ORTHO05D003986 1.1e-38 164.9 241 46.5
Aqoxy3G00881 Aquilegia oxysepala HOM05D003535 ORTHO05D003986 5.3e-38 162.5 353 38.5
CiPaw.06G075600 Carya illinoinensis HOM05D003535 ORTHO05D003986 5.3e-38 162.5 210 47.6
Cc11_g14150 Coffea canephora HOM05D003535 ORTHO05D003986 5.3e-38 162.5 377 35.3
PSO161G0011 Papaver somniferum HOM05D003535 ORTHO05D003986 5.0e-36 156.0 301 41.9
MSTRG.630 Avicennia marina HOM05D003535 ORTHO05D003986 1.5e-35 154.5 376 34.8
SalBow2G1585 Salvia bowleyana HOM05D003535 ORTHO05D003986 7.2e-35 152.1 365 34.5
Oeu018841.2 Olea europaea HOM05D003535 ORTHO05D003986 6.1e-34 149.1 302 37.7
AUR62026558 Chenopodium quinoa HOM05D003535 ORTHO05D003986 1.8e-33 147.5 325 36.9
PSO478G4390 Papaver somniferum HOM05D003535 ORTHO05D003986 1.8e-33 147.5 310 40.0
EL10Ac6g13752 Beta vulgaris HOM05D003535 ORTHO05D003986 8.8e-33 145.2 325 35.4
CAN.G159.17 Capsicum annuum HOM05D003535 ORTHO05D003986 1.2e-32 144.8 378 33.3
AUR62039423 Chenopodium quinoa HOM05D003535 ORTHO05D003986 1.5e-32 144.4 325 36.9
Migut.L01454 Erythranthe guttata HOM05D003535 ORTHO05D003986 4.4e-32 142.9 368 34.8
Thhalv10018424m.g Eutrema salsugineum HOM05D003535 ORTHO05D003986 1.4e-30 137.9 187 48.7
Lsat_1_v5_gn_8_162680 Lactuca sativa HOM05D003535 ORTHO05D003986 1.8e-30 137.5 362 33.4
AL2G29460 Arabidopsis lyrata HOM05D003535 ORTHO05D003986 3.1e-30 136.7 189 47.6
SGA_v2.0_scaffold166G38327 Striga asiatica HOM05D003535 ORTHO05D003986 3.1e-30 136.7 363 35.3
Carub.0002s1687 Capsella rubella HOM05D003535 ORTHO05D003986 2.7e-29 133.7 195 47.2
Hma1.2p1_1975F.1_g309720 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 1.0e-28 131.7 299 38.8
AT1G70180 Arabidopsis thaliana HOM05D003535 ORTHO05D003986 1.7e-28 131.0 195 47.2
Os04g0465000 Oryza sativa ssp. japonica HOM05D003535 ORTHO05D003986 1.7e-28 131.0 333 36.3
DCAR_007109 Daucus carota HOM05D003535 ORTHO05D003986 3.2e-27 126.7 461 28.6
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.2e-27 126.7 298 36.9
CARHR063250 Cardamine hirsuta HOM05D003535 ORTHO05D003986 5.5e-27 125.9 195 46.2
GSVIVG01032539001 Vitis vinifera HOM05D003535 ORTHO05D003986 5.5e-27 125.9 297 36.7
Hund05943 Selenicereus undatus HOM05D003535 ORTHO05D003986 1.6e-26 124.4 331 33.5
BcaC08g45838 Brassica carinata HOM05D003535 ORTHO05D003986 2.1e-26 124.0 198 45.5
BolC6t38746H Brassica oleracea HOM05D003535 ORTHO05D003986 2.1e-26 124.0 198 45.5
A07p31200 Brassica napus HOM05D003535 ORTHO05D003986 2.8e-26 123.6 192 45.3
Aa31LG4G10720 Aethionema arabicum HOM05D003535 ORTHO05D003986 6.1e-26 122.5 218 42.7
C06p36250 Brassica napus HOM05D003535 ORTHO05D003986 1.0e-25 121.7 198 46.5
BraA07t30753Z Brassica rapa HOM05D003535 ORTHO05D003986 1.4e-25 121.3 192 45.8
PGR044G1333 Punica granatum HOM05D003535 ORTHO05D003986 1.4e-25 121.3 318 34.9
Eucgr.K02879 Eucalyptus grandis HOM05D003535 ORTHO05D003986 1.8e-25 120.9 299 34.4
BcaB03g15532 Brassica carinata HOM05D003535 ORTHO05D003986 2.3e-25 120.6 192 44.8
C02p27320 Brassica napus HOM05D003535 ORTHO05D003986 8.8e-25 118.6 195 47.7
A02p16370 Brassica napus HOM05D003535 ORTHO05D003986 1.2e-24 118.2 194 46.9
BraA02t06696Z Brassica rapa HOM05D003535 ORTHO05D003986 1.2e-24 118.2 194 46.9
Prupe.3G278600 Prunus persica HOM05D003535 ORTHO05D003986 1.2e-24 118.2 311 36.7
Sp5g25300 Schrenkiella parvula HOM05D003535 ORTHO05D003986 1.2e-24 118.2 189 43.9
BolC2t08793H Brassica oleracea HOM05D003535 ORTHO05D003986 2.6e-24 117.1 195 47.2
RcHm_v2.0_Chr2g0170341 Rosa chinensis HOM05D003535 ORTHO05D003986 4.4e-24 116.3 301 36.2
MSTRG.7864 Avicennia marina HOM05D003535 ORTHO05D003986 9.8e-24 115.2 378 31.7
HanXRQChr12g0371191 Helianthus annuus HOM05D003535 ORTHO05D003986 1.3e-23 114.8 391 31.2
FvH4_6g50070 Fragaria vesca HOM05D003535 ORTHO05D003986 1.7e-23 114.4 298 34.9
Lju41A30T60 Lonicera japonica HOM05D003535 ORTHO05D003986 1.7e-23 114.4 302 35.8
BcaC03g15159 Brassica carinata HOM05D003535 ORTHO05D003986 1.1e-22 111.7 199 46.7
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.4e-22 109.4 301 33.9
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.4e-22 109.4 301 33.9
Cpa.g.sc5.338 Carica papaya HOM05D003535 ORTHO05D003986 7.0e-22 109.0 139 49.6
BcaB05g24535 Brassica carinata HOM05D003535 ORTHO05D003986 3.5e-21 106.7 197 43.1
ECA233G0946 Erigeron canadensis HOM05D003535 ORTHO05D003986 4.5e-21 106.3 452 28.3
Cc07_g02620 Coffea canephora HOM05D003535 ORTHO05D003986 2.5e-19 100.5 305 36.1
CSS0038696 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 4.3e-19 99.8 301 32.2
Sed0009689 Sechium edule HOM05D003535 ORTHO05D003986 5.6e-19 99.4 300 36.7
Sc20g0002750 Simmondsia chinensis HOM05D003535 ORTHO05D003986 9.5e-19 98.6 305 34.1
CsaV3_5G037470 Cucumis sativus L. HOM05D003535 ORTHO05D003986 1.2e-18 98.2 304 35.5
MD17G1040400 Malus domestica HOM05D003535 ORTHO05D003986 1.2e-18 98.2 306 37.3
ATR1101G092 Amborella trichopoda HOM05D003535 ORTHO05D003986 1.6e-18 97.8 301 33.9
Peaxi162Scf01141g00123 Petunia axillaris HOM05D003535 ORTHO05D003986 1.0e-17 95.1 305 30.2
MELO3C021511.2 Cucumis melo HOM05D003535 ORTHO05D003986 2.3e-17 94.0 312 33.0
HanXRQChr17g0546981 Helianthus annuus HOM05D003535 ORTHO05D003986 2.3e-17 94.0 431 29.0
Haze_14626 Corylus avellana HOM05D003535 ORTHO05D003986 5.2e-17 92.8 307 35.8
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.5e-16 91.3 298 31.2
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.2e-15 87.4 298 33.9
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.2e-15 87.4 298 33.9
Zm00001eb424450 Zea mays HOM05D003535 ORTHO05D003986 2.2e-15 87.4 166 41.0
MSTRG.23982 Avicennia marina HOM05D003535 ORTHO05D003986 3.7e-15 86.7 300 33.0
Migut.H00157 Erythranthe guttata HOM05D013849 ORTHO05D003986 4.9e-15 86.3 304 31.9
Ciclev10012366m.g Citrus clementina HOM05D003535 ORTHO05D003986 6.4e-15 85.9 300 33.0
Nitab4.5_0010523g0040 Nicotiana tabacum HOM05D003535 ORTHO05D003986 8.3e-15 85.5 131 46.6
Cfa007471 Carpinus fangiana HOM05D003535 ORTHO05D003986 4.1e-14 83.2 307 34.2
Nitab4.5_0000257g0080 Nicotiana tabacum HOM05D003535 ORTHO05D003986 4.1e-14 83.2 131 45.8
COL.COLO4_37887 Corchorus olitorius HOM05D003535 ORTHO05D003986 9.2e-14 82.0 88 52.3
CAN.G206.59 Capsicum annuum HOM05D003535 ORTHO05D003986 1.6e-13 81.3 299 30.8
Sopen02g031960 Solanum pennellii HOM05D003535 ORTHO05D003986 2.0e-13 80.9 304 31.9
Zm00001eb080440 Zea mays HOM05D003535 ORTHO05D003986 4.6e-13 79.7 232 30.2
CiPaw.04G022500 Carya illinoinensis HOM05D003535 ORTHO05D003986 7.8e-13 79.0 309 32.0
SEGI_38155 Sequoiadendron giganteum HOM05D003535 ORTHO05D003986 8.6e-12 75.5 313 31.6
Hma1.2p1_0697F.1_g205050 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 1.1e-11 75.1 158 39.9
Nitab4.5_0007185g0090 Nicotiana tabacum HOM05D003535 ORTHO05D003986 4.3e-11 73.2 301 30.2
Sc11g0001420 Simmondsia chinensis HOM05D003535 ORTHO05D003986 2.1e-10 70.9 125 39.2
Peaxi162Scf00129g00822 Petunia axillaris HOM05D003535 ORTHO05D003986 2.0e-08 64.3 220 30.9
Nitab4.5_0001952g0220 Nicotiana tabacum HOM05D003535 ORTHO05D003986 5.8e-08 62.8 306 28.1
FAN02G0030 Fragaria x ananassa HOM05D003535 ORTHO05D046639 7.0e-06 55.8 264 29.5
FAN02G2062 Fragaria x ananassa HOM05D003535 ORTHO05D046639 7.0e-06 55.8 264 29.5
Cpa.g.sc14.83 Carica papaya HOM05D003535 ORTHO05D003986 9.2e-06 55.5 297 28.6


User provided reference genes

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