Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 2.7e-166 588.6 295 100.0
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 2.2e-128 462.6 300 78.0
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 3.8e-120 435.3 278 80.2
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 2.6e-116 422.5 302 74.5
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 6.6e-112 407.9 209 98.1
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 1.6e-102 376.7 311 65.6
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 7.0e-98 361.3 314 62.4
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 4.6e-97 358.6 315 62.9
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 5.2e-93 345.1 304 62.2
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 8.3e-91 337.8 304 59.9
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 9.2e-90 334.3 298 62.4
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 2.7e-89 332.8 304 59.5
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 3.5e-89 332.4 307 57.7
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 7.8e-89 331.3 303 57.8
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 3.9e-88 328.9 303 60.7
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 5.1e-88 328.6 316 56.6
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 6.6e-88 328.2 277 62.5
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 2.5e-87 326.2 253 67.2
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 2.1e-86 323.2 295 57.6
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 2.1e-86 323.2 275 62.2
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 2.1e-86 323.2 301 59.1
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 6.2e-86 321.6 317 53.9
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 1.8e-85 320.1 291 57.7
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 1.8e-85 320.1 252 63.1
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 3.1e-85 319.3 304 56.6
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 3.1e-85 319.3 301 58.5
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 6.8e-85 318.2 306 56.2
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 7.6e-84 314.7 308 56.5
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 7.6e-84 314.7 312 55.4
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 1.7e-83 313.5 270 61.5
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 2.9e-83 312.8 313 56.9
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 6.4e-83 311.6 292 57.5
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 8.4e-83 311.2 321 53.9
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 8.4e-83 311.2 238 64.3
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 1.9e-82 310.1 246 61.8
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 7.1e-82 308.1 317 54.9
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 7.1e-82 308.1 237 65.0
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 9.2e-82 307.8 270 60.4
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 9.2e-82 307.8 351 50.4
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 2.1e-81 306.6 228 69.7
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 4.6e-81 305.4 308 55.8
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 6.0e-81 305.1 328 53.4
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 6.0e-81 305.1 301 56.1
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 7.8e-81 304.7 302 56.0
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.0e-80 304.3 307 55.4
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 1.0e-80 304.3 340 53.2
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 1.0e-80 304.3 310 56.8
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 1.3e-80 303.9 250 60.4
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.3e-80 303.9 307 55.4
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.7e-80 303.5 237 62.9
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 2.3e-80 303.1 260 60.0
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 2.3e-80 303.1 305 52.8
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 2.3e-80 303.1 304 57.6
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 3.0e-80 302.8 314 54.8
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 3.9e-80 302.4 243 63.4
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 3.9e-80 302.4 243 63.4
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 6.6e-80 301.6 223 65.5
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 8.7e-80 301.2 307 57.0
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 1.1e-79 300.8 308 54.9
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 1.1e-79 300.8 317 52.7
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 1.5e-79 300.4 266 58.6
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 1.5e-79 300.4 316 55.1
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 1.9e-79 300.1 306 53.9
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 9.6e-79 297.7 307 55.4
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 1.6e-78 297.0 291 53.6
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 1.6e-78 297.0 309 55.7
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 4.7e-78 295.4 357 48.7
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 8.1e-78 294.7 306 56.5
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 1.1e-77 294.3 317 53.6
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 1.1e-77 294.3 307 55.0
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 1.1e-77 294.3 310 53.2
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 1.1e-77 294.3 301 53.5
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 2.4e-77 293.1 305 55.1
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 9.0e-77 291.2 308 54.5
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 1.2e-76 290.8 302 53.6
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.2e-76 290.8 237 61.2
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 1.5e-76 290.4 311 51.8
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.5e-76 290.4 231 61.5
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 3.4e-76 289.3 318 52.8
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 3.4e-76 289.3 239 61.9
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 5.8e-76 288.5 291 55.0
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 5.8e-76 288.5 283 54.4
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 9.9e-76 287.7 294 53.4
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 1.3e-75 287.3 301 52.8
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 4.9e-75 285.4 320 51.9
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 4.9e-75 285.4 327 51.4
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 2.4e-74 283.1 301 52.2
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 2.4e-74 283.1 359 48.5
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 7.1e-74 281.6 290 51.4
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 1.6e-73 280.4 290 51.0
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 1.6e-73 280.4 291 54.6
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.7e-73 279.6 320 51.6
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 1.7e-72 276.9 299 50.5
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 2.3e-72 276.6 290 51.0
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 3.0e-72 276.2 261 56.7
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 5.6e-71 271.9 199 67.8
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 3.6e-70 269.2 224 59.8
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.4e-68 262.7 279 50.9
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 2.9e-67 259.6 362 43.9
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 1.6e-65 253.8 201 62.7
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 1.5e-63 247.3 358 44.7
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 1.9e-63 246.9 289 50.2
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 2.4e-61 240.0 290 47.6
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 2.7e-57 226.5 306 48.4
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 2.7e-57 226.5 149 74.5
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 6.0e-57 225.3 170 64.7
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 5.1e-56 222.2 277 48.4
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 5.6e-55 218.8 192 58.9
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 5.3e-53 212.2 212 50.0
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 4.9e-51 205.7 143 72.0
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 1.9e-47 193.7 241 47.3
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 4.8e-46 189.1 293 41.3
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 3.4e-44 183.0 216 44.4
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 3.9e-40 169.5 218 49.5
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 2.8e-38 163.3 224 44.2
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 6.3e-38 162.2 216 44.0
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 6.3e-38 162.2 216 44.0
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 8.2e-38 161.8 242 43.0
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 1.3e-35 154.5 86 88.4
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 8.8e-32 141.7 198 39.9
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 4.4e-23 112.8 93 60.2
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 1.3e-22 111.3 180 39.4
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 1.2e-20 104.8 211 33.2
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 6.5e-11 72.4 79 51.9
PRCOL_00005055 Prasinoderma coloniale HOM05D006231 ORTHO05D007857 1.4e-08 64.7 170 27.6
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 1.3e-06 58.2 121 27.3


User provided reference genes

Program Settings