Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g099480 Pisum sativum HOM05D002956 ORTHO05D008031 3.5e-85 318.2 151 100.0
Psat2g099560 Pisum sativum HOM05D001082 ORTHO05D001538 1.7e-71 272.7 129 100.0
Psat5g130120 Pisum sativum HOM05D001082 ORTHO05D001538 1.1e-51 206.8 99 99.0
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 4.8e-50 201.4 149 68.5
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 1.5e-43 179.9 93 91.4
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 4.3e-43 178.3 154 58.4
Psat4g060320 Pisum sativum HOM05D002956 ORTHO05D008031 1.6e-42 176.4 146 63.0
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 3.7e-42 175.3 146 61.0
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 3.7e-42 175.3 142 61.3
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 5.3e-41 171.4 152 57.2
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 2.0e-40 169.5 150 55.3
VMungo1080G1429 Vigna mungo HOM05D002956 ORTHO05D008031 6.5e-39 164.5 136 61.0
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 4.2e-38 161.8 147 55.1
Lalb_Chr15g0078511 Lupinus albus HOM05D002956 ORTHO05D008031 7.2e-38 161.0 138 59.4
arahy.Tifrunner.gnm1.ann1.1Z9FJQ Arachis hypogaea HOM05D002956 ORTHO05D008031 3.0e-36 155.6 136 57.4
arahy.Tifrunner.gnm1.ann1.XLU01S Arachis hypogaea HOM05D002956 ORTHO05D008031 1.5e-35 153.3 142 54.9
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 1.4e-33 146.7 142 54.9
Aqoxy2G00442 Aquilegia oxysepala HOM05D002956 ORTHO05D008031 6.9e-33 144.4 152 48.7
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 2.0e-32 142.9 147 51.0
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 2.2e-31 139.4 149 49.7
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 2.2e-31 139.4 154 48.1
Haze_23261 Corylus avellana HOM05D002956 ORTHO05D008031 2.9e-31 139.0 147 51.7
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 6.5e-31 137.9 154 48.1
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 2.5e-30 136.0 141 51.1
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 2.5e-30 136.0 142 51.4
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 3.2e-30 135.6 146 47.9
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 4.2e-30 135.2 147 50.3
Sc06g0004740 Simmondsia chinensis HOM05D002956 ORTHO05D008031 5.5e-30 134.8 164 45.1
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 5.5e-30 134.8 146 50.0
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 9.4e-30 134.0 144 48.6
PSO384G3941 Papaver somniferum HOM05D002956 ORTHO05D008031 1.6e-29 133.3 139 48.9
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 3.6e-29 132.1 143 48.3
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 4.6e-29 131.7 151 48.3
Hund07424 Selenicereus undatus HOM05D002956 ORTHO05D008031 4.6e-29 131.7 142 50.7
Actinidia06980 Actinidia chinensis HOM05D002956 ORTHO05D008031 6.1e-29 131.3 149 49.0
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 7.9e-29 131.0 148 46.6
TAR369G0726 Trochodendron aralioides HOM05D002956 ORTHO05D008031 1.0e-28 130.6 143 49.0
ClCG02G022710 Citrullus lanatus HOM05D002956 ORTHO05D008031 1.4e-28 130.2 148 48.0
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 1.4e-28 130.2 147 45.6
Dinv36148 Davidia involucrata HOM05D002956 ORTHO05D008031 5.1e-28 128.3 146 47.9
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 6.7e-28 127.9 142 49.3
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 6.7e-28 127.9 142 49.3
AUR62000217 Chenopodium quinoa HOM05D002956 ORTHO05D008031 6.7e-28 127.9 147 48.3
Duzib150G0193 Durio zibethinus HOM05D002956 ORTHO05D008031 6.7e-28 127.9 149 45.6
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 8.8e-28 127.5 144 50.0
CARHR118990 Cardamine hirsuta HOM05D002956 ORTHO05D008031 8.8e-28 127.5 147 45.6
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 1.1e-27 127.1 149 45.0
FAN11G2127 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.1e-27 127.1 151 47.0
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 1.1e-27 127.1 142 47.2
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 1.1e-27 127.1 142 46.5
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 1.1e-27 127.1 142 46.5
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 2.0e-27 126.3 137 48.9
EL10Ac4g10091 Beta vulgaris HOM05D002956 ORTHO05D008031 2.6e-27 125.9 139 46.8
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 2.6e-27 125.9 137 50.4
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 3.3e-27 125.6 153 45.1
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 4.4e-27 125.2 139 49.6
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 4.4e-27 125.2 142 46.5
FAN16G1792 Fragaria x ananassa HOM05D002956 ORTHO05D008031 7.4e-27 124.4 151 47.0
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 9.7e-27 124.0 149 44.3
AL4G20000 Arabidopsis lyrata HOM05D002956 ORTHO05D008031 2.8e-26 122.5 142 47.2
Carub.0004s0727 Capsella rubella HOM05D002956 ORTHO05D008031 3.7e-26 122.1 147 45.6
AT2G26810 Arabidopsis thaliana HOM05D002956 ORTHO05D008031 4.8e-26 121.7 142 46.5
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 6.3e-26 121.3 144 44.4
DCAR_006894 Daucus carota HOM05D002956 ORTHO05D008031 1.1e-25 120.6 149 45.0
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 2.4e-25 119.4 142 46.5
Sopen11g024800 Solanum pennellii HOM05D002956 ORTHO05D008031 2.4e-25 119.4 143 45.5
Cc01_g06320 Coffea canephora HOM05D002956 ORTHO05D008031 3.1e-25 119.0 150 43.3
Sabra09G0051500 Salix brachista HOM05D002956 ORTHO05D008031 3.1e-25 119.0 147 42.9
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 3.1e-25 119.0 139 44.6
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 4.1e-25 118.6 170 40.6
PGSC0003DMG400031243 Solanum tuberosum HOM05D002956 ORTHO05D008031 5.3e-25 118.2 143 44.8
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 5.3e-25 118.2 144 48.6
MBI19_g19211_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D008031 9.1e-25 117.5 151 45.0
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 1.2e-24 117.1 141 46.1
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 1.5e-24 116.7 146 43.2
SGA_v2.0_scaffold26G11398 Striga asiatica HOM05D002956 ORTHO05D008031 4.5e-24 115.2 156 43.6
QL01p016670 Quercus lobata HOM05D002956 ORTHO05D008031 7.7e-24 114.4 142 45.8
ATR0307G044 Amborella trichopoda HOM05D002956 ORTHO05D008031 2.9e-23 112.5 165 39.4
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 3.8e-23 112.1 145 43.4
Oeu061696.1 Olea europaea HOM05D002956 ORTHO05D008031 9.4e-22 107.5 185 39.5
CDE04G0360 Ceratophyllum demersum HOM05D002956 ORTHO05D008031 3.0e-20 102.4 112 47.3
SEGI_28475 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 5.2e-20 101.7 146 38.4
RcHm_v2.0_Chr5g0050251 Rosa chinensis HOM05D002956 ORTHO05D008031 3.3e-19 99.0 104 51.0
MELO3C014548.2 Cucumis melo HOM05D002956 ORTHO05D008031 4.4e-19 98.6 104 50.0
Nitab4.5_0007012g0050 Nicotiana tabacum HOM05D002956 ORTHO05D008031 2.8e-18 95.9 120 45.8
Atru.chr3.3008 Acer truncatum HOM05D002956 ORTHO05D008031 4.8e-18 95.1 119 47.1
Migut.N02382 Erythranthe guttata HOM05D002956 ORTHO05D008031 1.6e-16 90.1 103 47.6
Rhsim13G0206100 Rhododendron simsii HOM05D002956 ORTHO05D008031 2.0e-16 89.7 157 37.6
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 2.6e-16 89.4 142 35.2
Zm00001eb110260 Zea mays HOM05D002956 ORTHO05D008031 4.5e-16 88.6 116 44.0
unitig_22.g6189 Utricularia gibba HOM05D002956 ORTHO05D008031 2.2e-15 86.3 109 43.1
FAN25G3179 Fragaria x ananassa HOM05D002956 ORTHO05D008031 3.8e-15 85.5 72 56.9
HPP92_001025 Vanilla planifolia HOM05D002956 ORTHO05D008031 1.1e-14 84.0 102 44.1
AUR62006562 Chenopodium quinoa HOM05D002956 ORTHO05D008031 2.5e-14 82.8 183 35.0
Lj2C795T0 Lonicera japonica HOM05D002956 ORTHO05D008031 9.4e-14 80.9 63 58.7
Solyc11g065040.2 Solanum lycopersicum HOM05D002956 ORTHO05D008031 2.1e-13 79.7 69 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 6.1e-13 78.2 130 32.3
Peaxi162Scf00004g04220 Petunia axillaris HOM05D002956 ORTHO05D008031 1.0e-12 77.4 72 55.6
SEGI_15484 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 4.0e-12 75.5 108 37.0
Nitab4.5_0004018g0060 Nicotiana tabacum HOM05D002956 ORTHO05D008031 5.2e-12 75.1 107 42.1
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 5.7e-11 71.6 146 32.2
Psat0s4720g0080 Pisum sativum HOM05D002956 ORTHO05D008031 9.7e-11 70.9 33 93.9
Lsat_1_v5_gn_5_63100 Lactuca sativa HOM05D002956 ORTHO05D008031 6.3e-10 68.2 200 27.0
Aa31LG5G8970 Aethionema arabicum HOM05D002956 ORTHO05D008031 8.2e-10 67.8 122 36.1
FAN25G0087 Fragaria x ananassa HOM05D002956 ORTHO05D008031 2.4e-09 66.2 72 45.8
FAN21G3062 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.2e-08 63.9 47 63.8
CAN.G1049.9 Capsicum annuum HOM05D002956 ORTHO05D008031 5.9e-08 61.6 68 47.1
Sopen08g018250 Solanum pennellii HOM05D001920 ORTHO05D004895 6.5e-07 58.2 76 36.8
CBR_g39846 Chara braunii HOM05D002956 ORTHO05D008031 1.5e-06 57.0 115 28.7
Solyc08g062770.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 4.2e-06 55.5 76 39.5
Nitab4.5_0003458g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 7.2e-06 54.7 76 38.2


User provided reference genes

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