Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 0.0e+00 1088.2 599 100.0
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 3.1e-278 961.4 596 84.1
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 7.7e-261 903.7 590 79.8
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 7.5e-256 887.1 590 79.3
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 1.2e-248 863.2 590 74.9
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 1.1e-241 840.1 590 73.9
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 2.8e-234 815.5 592 70.9
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 3.1e-233 812.0 590 70.8
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 2.8e-210 735.7 590 64.7
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 1.4e-209 733.4 554 70.8
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 7.6e-208 727.6 590 64.7
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 9.9e-208 727.2 597 64.3
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 6.4e-207 724.5 607 62.9
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 1.4e-185 653.7 591 57.5
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 1.9e-182 643.3 590 57.5
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 2.5e-182 642.9 590 57.5
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 5.7e-179 631.7 591 55.5
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 1.2e-176 624.0 591 55.8
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 2.0e-176 623.2 590 55.9
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 1.0e-175 620.9 590 55.8
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 1.1e-174 617.5 590 55.8
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 2.7e-173 612.8 611 53.0
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 3.6e-173 612.5 593 55.5
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 1.7e-170 603.6 688 49.7
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 2.8e-170 602.8 590 54.9
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 5.0e-167 592.0 583 54.0
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 5.5e-166 588.6 591 53.1
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 3.0e-164 582.8 592 53.2
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 1.1e-163 580.9 591 51.1
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 1.8e-161 573.5 584 52.1
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 5.3e-161 572.0 583 54.0
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 1.6e-160 570.5 592 50.0
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 7.7e-160 568.2 592 49.5
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 1.0e-159 567.8 592 53.0
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 4.2e-158 562.4 585 52.6
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 1.4e-156 557.4 591 50.8
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 3.0e-156 556.2 584 51.0
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 1.2e-155 554.3 597 51.4
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 2.0e-155 553.5 586 52.0
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 2.2e-154 550.1 583 49.4
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 4.1e-153 545.8 574 50.5
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 1.2e-152 544.3 592 50.5
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 2.7e-152 543.1 620 49.0
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 3.8e-151 539.3 586 51.5
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 1.1e-150 537.7 590 49.0
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 1.1e-150 537.7 590 48.3
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 5.5e-150 535.4 582 50.5
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 1.6e-149 533.9 597 48.9
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 2.1e-149 533.5 586 50.5
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 1.8e-148 530.4 582 50.0
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 4.0e-148 529.3 584 50.0
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 6.8e-148 528.5 588 48.6
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 1.5e-147 527.3 588 48.6
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 2.0e-147 526.9 582 49.3
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 4.4e-147 525.8 580 49.8
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 2.8e-146 523.1 582 47.8
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 2.4e-145 520.0 582 48.6
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 4.1e-145 519.2 580 49.1
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 5.4e-145 518.8 580 48.8
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 3.5e-144 516.2 580 48.3
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 3.5e-144 516.2 580 49.5
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 4.5e-144 515.8 580 48.1
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 4.5e-144 515.8 580 48.1
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 1.9e-142 510.4 580 47.9
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 2.5e-142 510.0 581 48.4
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 2.1e-141 506.9 542 49.4
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 1.4e-140 504.2 582 47.8
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 2.3e-140 503.4 586 46.8
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 3.0e-140 503.1 588 48.8
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 1.2e-139 501.1 580 47.1
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 1.7e-138 497.3 582 46.2
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 5.4e-137 492.3 585 46.3
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 2.7e-136 490.0 477 53.9
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 7.8e-136 488.4 582 46.0
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.3e-135 487.6 586 45.7
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.5e-134 484.2 349 73.4
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 4.3e-134 482.6 592 46.3
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 5.6e-134 482.3 592 45.9
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.6e-133 480.7 598 45.7
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 1.3e-130 471.1 545 46.4
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 3.7e-130 469.5 586 44.4
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 1.9e-129 467.2 545 46.2
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 2.4e-129 466.8 562 47.5
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 5.0e-127 459.1 608 43.8
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 1.9e-126 457.2 599 45.1
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.2e-125 454.5 581 44.8
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 5.2e-124 449.1 582 43.3
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 8.6e-119 431.8 584 41.8
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 4.3e-118 429.5 493 51.1
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.4e-116 424.5 581 42.7
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 1.4e-113 414.5 543 42.9
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 2.3e-111 407.1 591 41.3
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 7.6e-99 365.5 335 58.2
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 9.9e-99 365.2 592 36.3
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 6.6e-95 352.4 489 42.5
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 2.9e-90 337.0 347 54.2
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 3.9e-79 300.1 268 60.8
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 2.1e-77 294.3 455 37.4
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 2.8e-77 293.9 308 49.7
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 3.0e-71 273.9 579 33.3
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.1e-68 263.5 334 43.7
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 1.3e-61 241.9 298 42.6
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 2.0e-51 208.0 592 28.7
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 7.2e-49 199.5 146 63.0
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 1.0e-47 195.7 146 63.7
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 5.7e-46 189.9 597 26.8
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.9e-34 151.0 158 48.1
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.3e-31 141.4 106 67.9
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.0e-27 128.3 87 66.7
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 4.3e-25 120.6 152 49.3
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 6.1e-24 116.7 88 62.5
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 3.2e-20 104.4 99 54.5
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 8.6e-18 96.3 93 53.8
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 6.8e-15 86.7 452 21.2
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 1.6e-11 75.5 65 56.9
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 2.7e-11 74.7 59 62.7


User provided reference genes

Program Settings