Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 4.0e-274 948.0 670 100.0
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 7.1e-146 521.9 685 57.1
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 3.0e-136 490.0 686 49.4
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 5.1e-128 462.6 643 50.4
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.3e-120 438.0 681 44.2
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 6.1e-89 332.8 683 42.3
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 5.7e-87 326.2 725 37.8
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 5.0e-83 313.2 711 39.8
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 1.2e-76 292.0 695 36.0
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.7e-70 271.6 696 38.5
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 4.9e-70 270.0 746 35.4
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.6e-68 265.0 758 34.8
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 2.1e-65 254.6 677 38.1
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 7.0e-61 239.6 697 33.9
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.7e-59 235.0 757 31.3
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 3.0e-59 234.2 699 35.2
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 3.9e-59 233.8 532 45.9
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.1e-58 232.3 691 34.4
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.5e-58 231.1 737 32.3
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.7e-54 218.4 725 30.8
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 3.7e-54 217.2 716 32.0
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 5.4e-53 213.4 695 30.6
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 2.7e-52 211.1 732 32.0
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.7e-52 211.1 734 30.1
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.7e-52 211.1 734 30.1
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 6.0e-52 209.9 692 31.2
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 9.5e-50 202.6 176 73.3
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.1e-49 201.4 709 44.7
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.8e-48 198.4 688 29.5
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.8e-48 198.4 736 31.7
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 2.6e-47 194.5 563 33.0
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 5.8e-47 193.4 688 33.0
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 2.9e-46 191.0 684 30.1
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 2.7e-44 184.5 701 29.4
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.3e-43 181.4 689 30.9
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 6.6e-43 179.9 757 30.1
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 6.6e-43 179.9 697 29.8
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 5.6e-42 176.8 719 35.2
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 5.6e-42 176.8 704 31.5
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.6e-41 175.3 719 33.1
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 4.7e-41 173.7 685 28.8
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 8.1e-41 172.9 689 31.6
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.4e-40 172.2 694 30.8
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.8e-40 171.8 673 30.5
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.1e-40 171.0 180 55.0
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 5.8e-39 166.8 201 50.7
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.6e-39 166.4 202 46.5
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.3e-38 165.6 669 30.2
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.3e-38 165.6 166 54.2
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 2.9e-38 164.5 177 52.5
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 3.8e-38 164.1 696 29.2
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 4.9e-38 163.7 744 29.8
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 4.9e-38 163.7 785 26.2
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.4e-37 162.2 669 30.0
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.4e-37 160.2 675 30.7
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 7.1e-37 159.8 175 54.9
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 1.2e-36 159.1 176 51.1
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.6e-36 158.7 162 53.1
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 2.1e-36 158.3 170 56.5
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 2.7e-36 157.9 194 52.1
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 2.7e-36 157.9 698 26.1
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 6.0e-36 156.8 181 59.1
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.0e-35 156.0 168 56.5
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.0e-35 156.0 769 26.9
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.3e-35 154.8 692 29.6
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 5.1e-35 153.7 170 53.5
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 5.1e-35 153.7 209 47.4
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 6.6e-35 153.3 170 53.5
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 8.6e-35 152.9 172 55.8
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-34 152.5 170 48.8
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.5e-34 152.1 692 30.1
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.5e-34 151.4 167 58.1
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 7.3e-34 149.8 685 30.1
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.2e-33 149.1 217 51.6
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.6e-33 148.7 137 61.3
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 2.1e-33 148.3 220 42.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 2.1e-33 148.3 694 30.0
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 6.2e-33 146.7 167 63.5
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.4e-32 145.6 208 55.3
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.8e-32 145.2 671 25.5
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 2.4e-32 144.8 176 50.0
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 4.0e-32 144.1 96 75.0
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 6.9e-32 143.3 701 29.1
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 8.9e-32 142.9 701 26.4
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 4.4e-31 140.6 707 26.6
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 7.6e-31 139.8 693 29.7
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 9.9e-31 139.4 698 26.4
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.7e-30 138.7 216 50.9
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 2.2e-30 138.3 162 62.3
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.9e-30 137.9 737 32.8
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 4.9e-30 137.1 178 43.8
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 6.4e-30 136.7 209 52.2
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.9e-29 135.2 168 49.4
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.4e-29 134.8 692 28.0
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 2.4e-29 134.8 691 28.4
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 3.2e-29 134.4 163 61.3
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 4.6e-28 130.6 189 44.4
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 2.3e-27 128.3 163 58.9
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 3.0e-27 127.9 653 31.5
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 5.1e-27 127.1 721 28.3
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 5.1e-27 127.1 688 28.2
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 6.6e-27 126.7 206 42.2
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 8.7e-27 126.3 165 46.1
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.1e-26 125.9 164 49.4
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 2.8e-25 121.3 173 53.2
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 6.2e-25 120.2 153 49.0
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 8.1e-25 119.8 163 57.1
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.4e-24 119.0 164 52.4
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 4.0e-24 117.5 209 38.8
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 6.9e-24 116.7 590 29.7
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 6.9e-24 116.7 186 55.4
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 6.9e-24 116.7 176 50.6
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 6.9e-24 116.7 166 42.2
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 9.0e-24 116.3 163 49.1
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.5e-23 115.5 164 53.0
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 3.4e-23 114.4 168 55.4
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 3.4e-23 114.4 163 54.6
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 9.9e-23 112.8 164 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 6.4e-22 110.2 189 37.0
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.4e-21 109.0 146 47.3
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.4e-21 109.0 204 45.1
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.9e-21 108.6 204 45.1
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 2.4e-21 108.2 165 53.3
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 2.4e-21 108.2 165 53.3
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 7.1e-21 106.7 141 53.9
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 2.1e-20 105.1 682 26.8
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 2.7e-20 104.8 187 47.6
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 3.5e-20 104.4 132 62.1
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 4.6e-20 104.0 87 57.5
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 6.0e-20 103.6 71 71.8
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 1.3e-19 102.4 165 52.1
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 1.3e-19 102.4 165 52.1
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 3.0e-19 101.3 89 58.4
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 8.7e-19 99.8 157 42.7
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.1e-18 99.4 169 46.2
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.3e-18 97.8 272 34.6
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 1.6e-17 95.5 91 53.8
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.6e-17 95.5 86 55.8
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 4.8e-17 94.0 86 54.7
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.4e-16 92.4 88 55.7
VMungo0720G2920 Vigna mungo HOM05D005042 ORTHO05D006080 2.2e-14 85.1 210 34.8
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 5.5e-13 80.5 88 50.0
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 2.7e-12 78.2 152 38.8
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 1.8e-11 75.5 77 58.4
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 9.6e-10 69.7 89 46.1
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 2.9e-06 58.2 50 64.0


User provided reference genes

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