Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.9e-113 412.5 207 100.0
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 4.5e-67 258.5 180 73.9
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.2e-65 252.3 177 72.9
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 7.2e-65 251.1 152 85.5
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 2.2e-61 239.6 177 71.8
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.5e-57 226.1 177 68.4
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 5.5e-57 224.9 182 65.4
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 5.5e-57 224.9 178 69.1
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.7e-56 222.6 181 65.2
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 4.0e-55 218.8 177 66.1
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 7.7e-51 204.5 149 70.5
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 6.5e-50 201.4 179 61.5
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 2.1e-48 196.4 178 60.7
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 4.0e-47 192.2 191 53.4
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 4.0e-47 192.2 154 66.2
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 5.2e-47 191.8 180 56.7
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 5.2e-47 191.8 175 58.3
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.9e-47 191.0 175 60.0
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 8.9e-47 191.0 180 56.7
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.2e-46 190.7 175 59.4
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.0e-46 189.9 176 58.0
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 2.0e-46 189.9 176 59.7
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.0e-46 189.9 175 60.0
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 3.4e-46 189.1 185 54.6
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 3.4e-46 189.1 185 54.6
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 3.4e-46 189.1 183 56.3
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 3.4e-46 189.1 181 56.9
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 3.4e-46 189.1 140 65.7
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 7.5e-46 188.0 183 56.3
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 9.8e-46 187.6 177 58.2
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 9.8e-46 187.6 176 58.0
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 3.7e-45 185.7 178 54.5
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 3.7e-45 185.7 181 56.9
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 4.9e-45 185.3 176 58.0
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 8.3e-45 184.5 185 57.8
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.4e-44 183.7 181 54.7
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.8e-44 183.3 177 55.9
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 2.4e-44 183.0 179 57.5
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.4e-44 183.0 181 55.2
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.4e-44 183.0 196 52.6
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.4e-44 183.0 174 57.5
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 3.1e-44 182.6 213 49.8
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 5.4e-44 181.8 193 54.4
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 7.0e-44 181.4 185 51.4
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 7.0e-44 181.4 175 56.6
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 7.0e-44 181.4 182 57.1
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 9.2e-44 181.0 181 55.2
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.2e-43 180.6 185 54.1
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.6e-43 180.3 178 54.5
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 2.0e-43 179.9 183 54.6
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.7e-43 179.5 188 51.6
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 2.7e-43 179.5 176 54.5
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.7e-43 179.5 176 56.2
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 3.5e-43 179.1 185 53.5
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 4.5e-43 178.7 187 52.9
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 7.8e-43 177.9 183 54.1
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.7e-42 176.8 203 50.2
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.7e-42 176.8 178 54.5
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 2.3e-42 176.4 179 51.4
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.3e-42 176.4 129 65.9
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 2.3e-42 176.4 189 52.9
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 3.8e-42 175.6 188 52.7
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 3.8e-42 175.6 189 50.3
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 5.0e-42 175.3 170 55.9
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.0e-42 175.3 194 51.5
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.6e-42 174.9 201 49.3
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 8.6e-42 174.5 123 66.7
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.1e-41 174.1 129 65.1
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.1e-41 174.1 127 66.1
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.5e-41 173.7 123 68.3
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.5e-41 172.9 180 51.7
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 4.3e-41 172.2 123 69.1
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 4.3e-41 172.2 181 53.0
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 9.5e-41 171.0 181 54.7
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.6e-40 170.2 123 66.7
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.6e-40 170.2 175 51.4
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.1e-40 169.9 142 62.7
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 2.1e-40 169.9 176 52.8
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-40 169.9 192 51.0
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 3.6e-40 169.1 131 61.1
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.6e-40 169.1 183 51.9
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 3.6e-40 169.1 194 48.5
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.7e-40 168.7 123 63.4
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 8.0e-40 167.9 197 49.7
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.0e-39 167.5 169 56.2
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.0e-39 167.5 169 56.2
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.8e-39 166.8 123 67.5
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.8e-39 166.8 179 49.7
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.3e-39 166.4 133 63.9
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 2.3e-39 166.4 151 55.0
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 2.3e-39 166.4 140 60.7
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.0e-39 166.0 124 64.5
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 5.2e-39 165.2 190 47.4
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.2e-38 164.1 186 46.2
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.0e-38 163.3 183 51.4
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.3e-37 160.6 123 63.4
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.7e-37 160.2 181 48.6
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 4.9e-37 158.7 180 48.9
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 6.4e-37 158.3 181 49.7
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.1e-36 157.5 179 49.2
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 2.4e-36 156.4 181 48.6
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 5.4e-36 155.2 121 64.5
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.0e-35 153.3 180 47.8
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.7e-34 150.2 126 57.9
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.1e-33 147.5 180 45.6
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.9e-33 146.7 126 54.0
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 2.5e-33 146.4 180 48.3
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 4.3e-33 145.6 101 69.3
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 2.8e-32 142.9 131 57.3
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 6.2e-32 141.7 113 61.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.0e-31 139.0 184 47.8
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.8e-30 135.2 180 43.9
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.3e-29 134.0 97 67.0
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 8.3e-29 131.3 121 52.9
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.4e-28 129.8 103 62.1
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.4e-28 128.6 155 46.5
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 7.8e-27 124.8 125 48.8
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.1e-23 114.4 93 55.9
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.9e-21 105.5 146 43.8
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.6e-19 99.0 139 43.9
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 7.8e-19 98.2 80 58.8
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.0e-18 97.8 139 43.2
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 4.7e-16 89.0 128 45.3
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 4.4e-14 82.4 42 90.5
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 9.9e-14 81.3 131 37.4
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.7e-13 80.5 75 54.7
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 6.2e-08 62.0 55 56.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.0e-07 58.2 42 64.3
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 5.8e-06 55.5 82 41.5


User provided reference genes

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