Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.6e-35 152.1 73 100.0
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 9.2e-15 83.2 44 81.8
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.2e-14 82.8 47 78.7
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.7e-14 81.6 47 76.6
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 5.9e-14 80.5 47 76.6
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.7e-13 79.0 47 74.5
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.7e-13 79.0 47 74.5
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.7e-13 79.0 47 74.5
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.7e-13 79.0 47 74.5
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.7e-13 79.0 47 74.5
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.7e-13 79.0 47 74.5
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.7e-13 79.0 47 74.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.3e-13 78.6 47 74.5
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.9e-13 78.2 44 77.3
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.9e-13 78.2 49 71.4
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.9e-13 77.8 49 73.5
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.0e-13 77.4 47 72.3
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 5.0e-13 77.4 47 72.3
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 5.0e-13 77.4 47 72.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.0e-13 77.4 47 72.3
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.0e-13 77.4 47 72.3
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 6.6e-13 77.0 47 72.3
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 6.6e-13 77.0 47 72.3
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 6.6e-13 77.0 47 72.3
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.1e-12 76.3 47 70.2
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.5e-12 75.9 47 70.2
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.5e-12 75.9 47 70.2
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.5e-12 75.9 47 72.3
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.5e-12 75.9 47 72.3
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.5e-12 75.9 47 72.3
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.5e-12 75.9 47 70.2
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.5e-12 75.9 47 70.2
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.5e-12 75.9 47 70.2
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.9e-12 75.5 49 71.4
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.9e-12 75.5 49 71.4
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.9e-12 75.5 49 71.4
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.9e-12 75.5 49 71.4
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.9e-12 75.5 49 71.4
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.9e-12 75.5 47 70.2
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.5e-12 75.1 47 72.3
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.5e-12 75.1 47 72.3
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 2.5e-12 75.1 47 72.3
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 2.5e-12 75.1 47 72.3
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.5e-12 75.1 47 72.3
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 2.5e-12 75.1 47 72.3
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 2.5e-12 75.1 47 72.3
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.5e-12 75.1 47 72.3
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 3.3e-12 74.7 34 100.0
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 72.3
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 3.3e-12 74.7 47 70.2
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 4.3e-12 74.3 47 72.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 4.3e-12 74.3 47 70.2
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 4.3e-12 74.3 47 70.2
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 4.3e-12 74.3 47 70.2
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 4.3e-12 74.3 47 70.2
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 5.6e-12 73.9 47 68.1
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.6e-12 73.9 47 70.2
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.6e-12 73.9 47 70.2
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 5.6e-12 73.9 47 72.3
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.6e-12 73.9 47 72.3
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.6e-12 73.9 47 72.3
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 5.6e-12 73.9 47 70.2
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 5.6e-12 73.9 47 72.3
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.3e-12 73.6 47 70.2
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.3e-12 73.6 47 70.2
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 7.3e-12 73.6 47 68.1
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 9.5e-12 73.2 47 70.2
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 68.1
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 68.1
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 68.1
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 70.2
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.2e-11 72.8 47 68.1
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.6e-11 72.4 47 68.1
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.6e-11 72.4 47 68.1
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.6e-11 72.4 47 68.1
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.1e-11 72.0 42 73.8
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.1e-11 72.0 43 72.1
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.1e-11 72.0 43 72.1
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 2.8e-11 71.6 47 66.0
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 2.8e-11 71.6 47 68.1
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.8e-11 71.6 47 68.1
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.6e-11 71.2 47 68.1
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.6e-11 71.2 47 68.1
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 3.6e-11 71.2 47 66.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 3.6e-11 71.2 47 68.1
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 4.7e-11 70.9 47 68.1
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 4.7e-11 70.9 47 68.1
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 4.7e-11 70.9 47 66.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 6.1e-11 70.5 34 94.1
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.1e-11 70.5 47 68.1
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-10 69.7 47 66.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.2e-09 66.2 43 69.8
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.2e-08 62.0 39 69.2
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 8.3e-08 60.1 35 74.3
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.4e-07 59.3 43 60.5
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 7.0e-07 57.0 43 51.2
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 7.8e-06 53.5 43 51.2


User provided reference genes

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