Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 1.5e-250 869.0 430 100.0
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 2.0e-202 709.1 430 80.7
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 2.7e-199 698.7 427 82.4
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 2.2e-177 625.9 430 73.0
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 5.5e-176 621.3 394 80.7
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 3.6e-167 592.0 431 68.2
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 3.0e-166 589.0 427 68.9
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 1.0e-161 573.9 430 67.7
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 2.6e-157 559.3 343 80.8
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 3.1e-155 552.4 433 65.1
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 2.3e-153 546.2 433 64.4
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 5.7e-149 531.6 373 71.6
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 5.2e-126 455.3 435 54.3
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 4.3e-120 435.6 428 54.4
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 2.8e-119 433.0 431 52.9
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 2.4e-118 429.9 434 52.1
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 7.6e-117 424.9 429 52.9
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 1.1e-115 421.0 425 51.5
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 7.1e-115 418.3 437 50.8
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 7.1e-115 418.3 434 51.2
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 3.3e-112 409.5 440 50.7
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 4.3e-112 409.1 424 50.9
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 5.6e-112 408.7 434 50.9
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 7.3e-112 408.3 440 50.7
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 2.8e-111 406.4 427 50.4
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 6.2e-111 405.2 404 52.7
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 4.0e-110 402.5 436 50.7
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 9.9e-109 397.9 432 50.5
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 9.9e-109 397.9 427 50.1
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 1.3e-108 397.5 444 48.6
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 8.4e-108 394.8 434 49.5
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 8.4e-108 394.8 461 46.6
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 1.9e-107 393.7 430 48.8
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 7.1e-107 391.7 434 50.9
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 1.6e-106 390.6 433 50.6
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 7.8e-106 388.3 427 49.2
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 1.1e-104 384.4 445 47.6
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 7.6e-101 371.7 429 48.5
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 3.2e-99 366.3 429 45.5
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 1.0e-97 361.3 399 48.6
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 3.7e-95 352.8 425 47.1
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 2.6e-93 346.7 427 47.3
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 7.6e-93 345.1 431 43.4
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.7e-92 344.0 425 44.0
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 8.4e-92 341.7 429 43.8
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 3.2e-91 339.7 430 41.6
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 1.2e-90 337.8 424 44.1
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 2.7e-90 336.7 424 43.4
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 3.0e-89 333.2 430 42.1
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 3.0e-89 333.2 378 46.3
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 2.5e-88 330.1 447 41.2
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 4.3e-88 329.3 430 44.0
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 7.4e-88 328.6 375 46.9
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 2.1e-87 327.0 394 46.7
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 1.9e-83 313.9 360 49.2
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 5.5e-83 312.4 435 43.2
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 7.1e-83 312.0 385 43.4
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 7.1e-83 312.0 502 37.3
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 7.4e-80 302.0 380 43.7
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 8.2e-79 298.5 434 39.4
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 6.5e-76 288.9 425 39.1
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 6.7e-73 278.9 307 49.2
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 2.8e-71 273.5 422 42.2
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 7.9e-66 255.4 452 36.7
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 1.8e-65 254.2 459 35.1
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 8.2e-63 245.4 441 36.7
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.8e-57 227.6 271 45.8
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 1.6e-50 204.5 258 43.0
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 2.3e-49 200.7 212 50.5
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 1.3e-47 194.9 215 50.2
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 1.7e-47 194.5 324 37.0
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 4.8e-47 193.0 267 40.4
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 2.2e-44 184.1 188 49.5
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 1.8e-38 164.5 165 46.7
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.6e-34 151.4 316 33.5
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 3.4e-24 117.1 86 60.5
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 4.4e-24 116.7 261 32.6
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.5e-19 101.7 155 38.1
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 3.3e-19 100.5 77 59.7
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 7.3e-19 99.4 136 42.6
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.6e-18 98.2 80 57.5
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 3.0e-12 77.4 176 31.2
Lsat_1_v5_gn_1_21640 Lactuca sativa HOM05D001068 ORTHO05D002190 1.7e-07 61.6 95 44.2
Hma1.2p1_0248F.1_g102080 Hydrangea macrophylla HOM05D003443 ORTHO05D009887 6.4e-07 59.7 33 75.8
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 1.1e-06 58.9 47 55.3


User provided reference genes

Program Settings