Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.3e-66 255.4 125 100.0
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.1e-39 166.8 112 73.2
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.1e-39 166.8 121 68.6
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 5.2e-34 147.9 122 67.2
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 2.0e-33 146.0 122 61.5
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 7.8e-30 134.0 106 64.2
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.0e-29 133.7 118 63.6
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.6e-27 126.3 109 60.6
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 2.1e-27 125.9 117 56.4
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 2.1e-27 125.9 109 60.6
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.6e-27 125.2 107 58.9
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 6.1e-27 124.4 110 59.1
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.4e-26 123.2 112 58.0
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.3e-26 122.5 114 58.8
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 3.0e-26 122.1 108 54.6
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 3.0e-26 122.1 118 56.8
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.8e-26 120.9 111 55.0
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 8.9e-26 120.6 109 57.8
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.2e-25 120.2 112 57.1
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-25 119.8 105 58.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.0e-25 119.4 103 58.3
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 2.6e-25 119.0 127 54.3
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.4e-25 118.6 112 57.1
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 3.4e-25 118.6 114 57.9
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 4.4e-25 118.2 109 55.0
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.4e-25 118.2 112 58.0
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 5.8e-25 117.9 107 57.0
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 5.8e-25 117.9 110 58.2
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 7.5e-25 117.5 112 57.1
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.5e-25 117.5 112 57.1
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.5e-25 117.5 112 57.1
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.3e-24 116.7 110 58.2
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.3e-24 116.7 110 58.2
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.7e-24 116.3 113 55.8
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.2e-24 115.9 108 57.4
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 3.7e-24 115.2 116 54.3
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.9e-24 114.8 135 46.7
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 4.9e-24 114.8 107 57.0
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 6.4e-24 114.4 108 56.5
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 6.4e-24 114.4 113 54.9
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.4e-24 114.4 121 49.6
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.4e-24 114.4 106 56.6
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 8.3e-24 114.0 110 54.5
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.1e-23 113.6 112 55.4
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.4e-23 113.2 115 54.8
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.9e-23 112.8 112 55.4
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.9e-23 112.8 110 54.5
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.9e-23 112.8 110 54.5
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.9e-23 112.8 110 54.5
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.4e-23 112.5 112 55.4
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 2.4e-23 112.5 113 51.3
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 3.2e-23 112.1 110 54.5
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 3.2e-23 112.1 110 54.5
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 3.2e-23 112.1 110 54.5
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 3.2e-23 112.1 99 52.5
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 3.2e-23 112.1 129 48.8
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 4.1e-23 111.7 80 65.0
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 4.1e-23 111.7 100 57.0
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 5.4e-23 111.3 87 65.5
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.2e-22 110.2 108 56.5
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 1.6e-22 109.8 115 53.0
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.0e-22 109.4 110 54.5
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 3.5e-22 108.6 118 49.2
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 3.5e-22 108.6 111 50.5
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 4.6e-22 108.2 61 80.3
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 4.6e-22 108.2 110 55.5
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 6.0e-22 107.8 100 56.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 7.8e-22 107.5 115 52.2
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.3e-21 106.7 110 50.9
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 3.0e-21 105.5 113 51.3
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.9e-21 105.1 102 50.0
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.9e-21 105.1 123 48.8
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.6e-21 104.4 123 48.8
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.6e-21 104.4 123 48.8
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.1e-20 103.6 135 44.4
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.1e-20 103.6 121 48.8
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.1e-20 103.6 82 63.4
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.5e-20 102.4 121 48.8
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.3e-20 102.1 121 49.6
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.8e-19 99.0 69 66.7
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 6.2e-19 97.8 77 61.0
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 6.2e-19 97.8 107 52.3
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 8.0e-19 97.4 119 46.2
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 8.0e-19 97.4 104 51.9
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.1e-18 97.1 81 61.7
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.1e-18 97.1 81 61.7
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 4.0e-18 95.1 77 59.7
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 8.9e-18 94.0 113 46.0
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.9e-18 94.0 103 50.5
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 8.9e-18 94.0 116 47.4
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-17 93.6 120 48.3
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.5e-17 93.2 107 46.7
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 2.0e-17 92.8 108 46.3
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.0e-17 92.8 115 49.6
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.6e-17 92.4 107 46.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.4e-17 91.7 120 46.7
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 5.8e-17 91.3 107 45.8
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.8e-17 91.3 107 46.7
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 7.5e-17 90.9 94 50.0
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.8e-17 90.5 106 45.3
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.7e-16 89.7 75 60.0
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 2.2e-16 89.4 96 52.1
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.2e-16 89.4 111 49.5
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 2.2e-16 89.4 105 47.6
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.9e-16 89.0 106 44.3
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 3.7e-16 88.6 73 61.6
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 6.4e-16 87.8 108 48.1
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 6.4e-16 87.8 124 44.4
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.1e-15 87.0 107 49.5
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 1.1e-15 87.0 73 61.6
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.4e-15 86.7 70 58.6
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.4e-15 85.9 107 48.6
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 5.4e-15 84.7 98 44.9
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.2e-14 83.6 69 52.2
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.6e-14 83.2 130 44.6
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.6e-14 83.2 98 43.9
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 6.0e-14 81.3 113 40.7
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 7.8e-14 80.9 121 46.3
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 7.8e-14 80.9 121 44.6
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 7.8e-14 80.9 70 61.4
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.3e-13 80.1 58 63.8
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 1.7e-13 79.7 109 43.1
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.7e-13 79.7 87 49.4
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.7e-13 79.7 87 49.4
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 6.6e-13 77.8 96 40.6
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 6.6e-13 77.8 100 43.0
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.5e-12 76.6 100 46.0
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 1.5e-12 76.6 44 75.0
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.3e-12 75.5 103 46.6
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 3.3e-12 75.5 100 45.0
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 4.3e-12 75.1 87 48.3
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 7.3e-12 74.3 87 49.4
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 9.5e-12 73.9 104 47.1
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 9.5e-12 73.9 109 42.2
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.6e-11 72.0 64 56.2
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 6.2e-11 71.2 44 72.7
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 6.2e-11 71.2 98 44.9
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 6.2e-11 71.2 98 44.9
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 6.2e-11 71.2 100 44.0
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 8.1e-11 70.9 103 46.6
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 6.8e-10 67.8 95 45.3
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 2.0e-09 66.2 67 49.3
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 1.3e-08 63.5 107 37.4
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 2.2e-08 62.8 102 38.2
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 4.9e-08 61.6 107 39.3
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 8.3e-08 60.8 106 37.7
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.1e-07 60.5 111 36.0
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 1.1e-07 60.5 50 56.0
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.4e-07 60.1 110 37.3
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.9e-07 59.7 64 50.0
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 3.2e-07 58.9 99 37.4
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 4.1e-07 58.5 60 50.0
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 4.1e-07 58.5 106 42.5
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 4.1e-07 58.5 39 64.1
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 4.1e-07 58.5 33 78.8
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 5.4e-07 58.2 78 39.7
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.2e-06 57.0 70 45.7
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 1.2e-06 57.0 105 35.2
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 1.2e-06 57.0 116 31.9
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 1.2e-06 57.0 41 61.0
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 1.6e-06 56.6 106 36.8
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 1.6e-06 56.6 105 33.3
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 2.1e-06 56.2 108 35.2
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 3.5e-06 55.5 67 43.3
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 4.6e-06 55.1 98 34.7
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 4.6e-06 55.1 80 37.5
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 4.6e-06 55.1 116 37.9
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 7.8e-06 54.3 111 33.3


User provided reference genes

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