Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 2.9e-268 927.9 448 100.0
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 1.3e-127 460.7 256 89.8
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 2.5e-123 446.4 252 87.3
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 1.6e-122 443.7 252 86.9
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 8.4e-119 431.4 252 86.1
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 1.6e-117 427.2 252 82.5
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 2.7e-117 426.4 252 82.1
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 3.5e-117 426.0 252 82.5
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 6.7e-116 421.8 252 81.0
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 8.7e-116 421.4 252 81.7
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 6.2e-114 415.2 256 80.1
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 1.4e-113 414.1 252 81.0
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 3.1e-113 412.9 281 74.4
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.9e-113 411.8 252 79.8
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.6e-112 409.8 252 79.8
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 1.0e-111 407.9 256 77.3
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 1.0e-111 407.9 252 79.8
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 1.3e-111 407.5 252 79.4
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-111 407.5 252 79.4
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-111 407.5 252 79.4
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 3.8e-111 406.0 252 79.0
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 3.8e-111 406.0 252 79.4
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 3.8e-111 406.0 271 74.5
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 6.5e-111 405.2 252 77.8
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 6.5e-111 405.2 281 73.0
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 8.4e-111 404.8 252 78.2
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 1.4e-110 404.1 252 79.4
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 3.2e-110 402.9 252 78.2
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 3.2e-110 402.9 252 78.2
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 5.5e-110 402.1 252 77.4
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 7.1e-110 401.7 252 78.6
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 9.3e-110 401.4 252 78.2
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 1.2e-109 401.0 252 77.8
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.2e-109 401.0 256 75.4
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.2e-109 401.0 252 78.2
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 4.6e-109 399.1 252 76.6
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 4.6e-109 399.1 252 77.4
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 6.0e-109 398.7 252 77.4
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 7.9e-109 398.3 252 76.6
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 1.0e-108 397.9 252 77.0
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 1.0e-108 397.9 252 77.0
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.3e-108 397.5 281 70.1
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.8e-108 397.1 252 77.0
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 2.3e-108 396.7 256 76.6
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 2.3e-108 396.7 252 77.0
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 3.0e-108 396.4 252 77.4
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 5.1e-108 395.6 256 76.2
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.1e-108 395.6 266 74.8
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 5.1e-108 395.6 252 76.6
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 5.1e-108 395.6 252 77.0
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 5.1e-108 395.6 252 77.4
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 6.7e-108 395.2 252 76.6
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 6.7e-108 395.2 252 77.0
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 8.7e-108 394.8 252 76.6
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 1.1e-107 394.4 252 76.6
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.1e-107 394.4 252 76.6
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 1.5e-107 394.0 256 75.0
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 1.5e-107 394.0 252 77.0
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 1.5e-107 394.0 291 69.4
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 1.9e-107 393.7 252 76.6
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 2.5e-107 393.3 256 75.0
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 3.3e-107 392.9 256 75.0
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 3.3e-107 392.9 252 76.2
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 4.3e-107 392.5 256 75.0
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 4.3e-107 392.5 256 75.0
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 4.3e-107 392.5 256 75.0
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 4.3e-107 392.5 252 76.2
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 5.7e-107 392.1 256 75.0
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 7.4e-107 391.7 256 74.2
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 9.7e-107 391.3 252 76.2
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 9.7e-107 391.3 252 75.4
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 1.3e-106 391.0 252 75.4
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 1.3e-106 391.0 252 75.4
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 1.3e-106 391.0 252 75.8
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.3e-106 391.0 252 75.8
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 1.6e-106 390.6 279 69.5
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.6e-106 390.6 252 75.4
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 2.2e-106 390.2 282 69.9
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 2.8e-106 389.8 255 75.3
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 2.8e-106 389.8 280 70.7
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 3.7e-106 389.4 252 74.2
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 3.7e-106 389.4 255 74.9
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 4.8e-106 389.0 255 75.3
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 8.2e-106 388.3 252 75.0
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 1.1e-105 387.9 252 74.6
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 1.1e-105 387.9 252 75.0
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.4e-105 387.5 252 75.4
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.4e-105 387.5 252 75.0
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 1.8e-105 387.1 252 75.4
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 2.4e-105 386.7 255 74.9
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 2.4e-105 386.7 256 74.2
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 4.1e-105 386.0 252 75.0
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 9.0e-105 384.8 252 74.2
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 9.0e-105 384.8 257 73.9
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 2.0e-104 383.6 252 74.6
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.4e-104 382.9 250 73.6
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 5.9e-104 382.1 254 72.8
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 1.3e-103 380.9 252 73.0
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 1.7e-103 380.6 240 76.2
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 1.7e-103 380.6 252 73.0
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 2.9e-103 379.8 251 74.1
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 3.8e-103 379.4 252 74.2
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 8.5e-103 378.3 252 72.6
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 1.1e-102 377.9 250 74.8
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 1.4e-102 377.5 276 68.8
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 3.2e-102 376.3 251 74.5
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 4.2e-102 375.9 252 72.6
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 4.2e-102 375.9 252 72.6
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 9.4e-102 374.8 293 66.2
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-101 374.0 252 72.2
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 3.6e-101 372.9 258 70.5
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.4e-100 370.9 397 53.7
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 3.9e-100 369.4 269 68.4
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 2.2e-98 363.6 298 63.8
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 6.3e-98 362.1 250 70.0
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.1e-97 359.4 252 72.2
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.1e-97 359.4 252 72.2
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 2.6e-96 356.7 252 70.6
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 5.0e-95 352.4 252 69.0
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 1.1e-94 351.3 252 66.3
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.9e-94 350.5 252 68.7
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 2.5e-94 350.1 252 69.8
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 5.5e-94 349.0 252 70.2
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.6e-93 347.4 265 64.9
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 2.4e-89 333.6 252 63.1
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.4e-89 333.6 252 67.1
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 7.0e-89 332.0 252 63.9
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.5e-88 329.3 265 65.3
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 5.9e-88 328.9 253 66.4
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.7e-87 327.4 252 63.1
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 2.9e-87 326.6 252 62.7
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.0e-87 325.9 250 66.0
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 1.6e-85 320.9 281 57.7
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.7e-85 320.1 252 65.1
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.6e-85 319.7 210 71.4
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 6.7e-84 315.5 252 63.1
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 1.1e-83 314.7 252 63.9
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.7e-82 310.8 252 64.3
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.1e-81 306.2 240 66.7
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 3.8e-79 299.7 162 91.4
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 5.5e-78 295.8 252 56.3
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.6e-77 293.1 252 61.9
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 6.5e-71 272.3 168 76.8
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.1e-69 267.3 278 52.5
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.6e-67 260.4 183 72.1
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.3e-63 248.1 269 52.8
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 2.0e-59 234.2 252 49.2
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.7e-55 221.1 305 45.6
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.3e-55 220.7 253 49.4
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 4.3e-54 216.5 264 42.8
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 3.1e-52 210.3 270 40.0
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 5.2e-52 209.5 144 70.8
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 6.8e-52 209.1 142 71.8
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 5.8e-51 206.1 158 67.7
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 9.2e-49 198.7 143 68.5
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 1.2e-48 198.4 126 73.8
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 3.9e-47 193.4 132 68.9
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 1.1e-46 191.8 260 40.4
Psat2g071960 Pisum sativum HOM05D003847 ORTHO05D329044 2.1e-45 187.6 89 92.1
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 1.6e-32 144.8 95 74.7
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 2.7e-32 144.1 143 55.2
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 1.5e-30 138.3 96 69.8
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 4.0e-28 130.2 84 73.8
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 1.7e-26 124.8 125 56.8
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 1.0e-15 89.0 175 34.9
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 1.4e-12 78.6 171 32.7
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 1.5e-06 58.5 33 78.8


User provided reference genes

Program Settings